1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctgtgttagaatggatgcttttcttggtgattagaatgataccttagcatttcaaacttcctttgtcttatgctagtttggtcatataattctttggcagATTGGGAACTGTGTTGGTGCAGCTAATCACCGGAGCTTCATTGCCTTCCTCATTTCTGCAGTTTTGAGTACAATCTATGTCTCTATCATGTCAGTATATT
species | Glycine max |
transcript | GLYMA20G00710.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGTTCTTGTAGAAAATGCGTCATAGGACATGGATCATCACTGCCCATTT ATTGGGAACTGTGTTGGTGCAGCTAATCACCGGAGCTTCATTGCCTTCCTCEST: gi|298167053|gb|HO010492.1|HO010492
genomic: TCGTTCTTGTAGAAAATGCGTCCT-GGACATGGATCATCACTGCCCATTTgtaagttttc ... tctttggcagATTGGGAACTGTGTTGGTGCAGCTAATCACCGGAGCTTCATTGCCTTCCTC
EST: GTCGTTCTTGTAGAAAATGCGTCCTGGACATGGATCATCACTGCCCATTT ATTGGGAACTGTGTTGGTGCAGCTAATCACCGGAGCTTCATTGCCTTCCTC
genomic: GTCGTTCTTGTAGAAAATGCGTCCTGGACATGGATCATCACTGCCCATTTgtaagttttc ... tctttggcagATTGGGAACTGTGTTGGTGCAGCTAATCACCGGAGCTTCATTGCCTTCCTC
agcatttcaaacttcctttgtcttatgctagtttggtcatataattctttggcagATTGGGAACTGTGTTGGTGCAGCTAATCACCGGAGCTTCATTGCCTTCCTCATTTCTGCAGTTTTGAGTACAATCTATGTCTCTATCATGTCAGTATATT
ttcttt CT-rich tract
tcatataattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtgttagaatggatgcttttcttggtgattagaatgataccttagcatttcaaacttcctttgtcttatgctagtttggtcatataattctttggcagATTGGGAACTGTGTTGGTGCAGCTAATCACCGGAGCTTCATTGCCTTCCTCATTTCTGCAGTTTTGAGTACAATCTATGTCTCTATCATGTCAGTATATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
ctgtgtt
- - - - - - ggatgct
- - - - - - - - - - - cttggtg
- - - - - - - - - - - - - - - - - - tgatacc
- - - - - - - - - - - - - - - - - - - - - - - gcatttc