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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actgcactgaatagtgtccgtgttttccatttttcgttgttcacacttttttgcattcaccaatatattctaaatttgtctccctcacaatctgatgcagTGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGCTACTTCGGGTCAGCTTGGGCTTGAACTCCTAATGGTTACAGGAAGGGGA

Basic information

species Glycine max
transcript GLYMA19G43800.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193347226|gb|FK311012.1|FK311012
EST:     TTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAG                         TGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGC
genomic: TTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAGgtaggaagat ... tctgatgcagTGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGC
EST: gi|6133946|gb|AW132339.1|AW132339
EST:     TTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAG                         TGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGC
genomic: T-GGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAGgtaggaagat ... tctgatgcagTGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGC
EST: gi|8669886|gb|BE190993.1|BE190993
EST:     GTGGAAGTACAACCACTGCTAAGCCTGTAAACTCCCCAGCTGGTGTAAAG                         TGCTTCCTGGGTGCG
genomic: TTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAGgtaggaagat ... tctgatgcagTGCTTCCTGGGTGCG
EST: gi|192299585|gb|FG993255.1|FG993255
EST:     TTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAG                         TGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGC
genomic: TTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAGgtaggaagat ... tctgatgcagTGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGC
EST: gi|254347382|gb|GR853631.1|GR853631
EST:     TTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAG                         TGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGC
genomic: TTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAGgtaggaagat ... tctgatgcagTGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGC
EST: gi|214004245|gb|DB984719.1|DB984719
EST:     TTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAG                         TGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGC
genomic: TTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAGgtaggaagat ... tctgatgcagTGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGC
EST: gi|207802940|gb|GD776253.1|GD776253
EST:     TTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAG                         TGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGG
genomic: TTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAGgtaggaagat ... tctgatgcagTGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGG
EST: gi|151403035|gb|EV272848.1|EV272848
EST:     ATGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAG                         TGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGC
genomic: TTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAGgtaggaagat ... tctgatgcagTGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGC
EST: gi|193428028|gb|FK395888.1|FK395888
EST:     TTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAG                         TGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGC
genomic: TTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAGgtaggaagat ... tctgatgcagTGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGC
EST: gi|298167241|gb|HO010680.1|HO010680
EST:     TTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAG                         TGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGC
genomic: TTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAGgtaggaagat ... tctgatgcagTGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGC
EST: gi|207824544|gb|GD795906.1|GD795906
EST:     TTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAG                         TGCTTCCTGGGTGCGAAA
genomic: TTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAGgtaggaagat ... tctgatgcagTGCTTCCTGGGTGCGAAA
EST: gi|5760148|gb|AI965511.1|AI965511
EST:     TTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAG                         TGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGC
genomic: TTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCTGGTGTAAAGgtaggaagat ... tctgatgcagTGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGC
EST: gi|208197412|gb|GD995385.1|GD995385
EST:     TCCCCAGCTGGTGT-AAG                         TGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGC
genomic: TCCCCAGCTGGTGTAAAGgtaggaagat ... tctgatgcagTGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttttgcattcaccaatatattctaaatttgtctccctcacaatctgatgcagTGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGCTACTTCGGGTCAGCTTGGGCTTGAACTCCTAATGGTTACAGGAAGGGGA
                aatatattctaaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
actgcactgaatagtgtccgtgttttccatttttcgttgttcacacttttttgcattcaccaatatattctaaatttgtctccctcacaatctgatgcagTGCTTCCTGGGTGCGAAAGTATGAAATTAAATTTGGCAAAAAGGTTGCTGCTACTTCGGGTCAGCTTGGGCTTGAACTCCTAATGGTTACAGGAAGGGGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- tgcactg
- - - - - - - - -ccgtgtt
- - - - - - - - - - - - - - - - - - - -ttcacac
- - - - - - - - - - - - - - - - - - - - - - - - - - gcattca