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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcaaattcaaatacaggttactcagaattaggattggctgtttatatcaacttaatttttaagatttctatttttttcccccaaggttatgctatgcattctgtctgtcacaattaattaattctttggtgtctgaatatccttaaacctctaatgttaaagatatttacaatgcagGCTTGCAATTTGCTTACCAGCTCTTATACCTGTTGGATGCTACTGGATACTACTCGCTAGCACTGCACGCACTTGGGATTCATGTTTGCCGAGCTACAGG

Basic information

species Glycine max
transcript GLYMA19G43700.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G43700.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0036g01130.t01 (Vitis vinifera), 3'ss of exon 4
gtatgtcaaattcaaatacaggttactcagaattaggattggctgtttatatcaacttaatttttaagatttctatttttttcccccaaggttatgctatgcattctgtctgtcacaattaattaattctttggtgtctgaatatccttaaacctctaatgttaa--agatatttacaatgcagGCTTGCAATTTGCTTACCAGCTCTTATACCTGTTGGATGCTACTGGATACTACTCGCTAGCACTGCACGCACTTGGGATTCATGTTTGCCGAGCTACAGG
                                                                               |       || |||| |||  |  || ||||||||   |    ||  || | ||   |||  || |  ||    | | ||| | |   |||| ||| |  |||||| ||   |||||| || ||||| |||||  |||||||||||||||||| ||| || |||| ||| || || |||||||||||||| || |||||||||||
-------------------------------------------------------------------------------tgctaggaaatgtta-gcttggtcttgtgtctgtcttcacatgtttgttatgtga-atctccattttgtt---tccccaatctgagctagatttttgctgtgcagGATTATCATTTGCCTATCAGCTGTTATATTTGTTGGATGCTACTGGATTCTATTCTCTAGGACTACATGCTCTTGGGATTCATGTGTGTCGAGCTACAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttggtgtctgaatatccttaaacctctaatgttaaagatatttacaatgcagGCTTGCAATTTGCTTACCAGCTCTTATACCTGTTGGATGCTACTGGATACTACTCGCTAGCACTGCACGCACTTGGGATTCATGTTTGCCGAGCTACAGG
                          ctctaat  putative branch site (score: 3)
                             taatgttaaagatatt  TA-rich tract