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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttccgtctccataatctcataccttacctctggaatttttcttgtcatctcatgatgttaacaacttaacctgcagAGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACTATCTATCATGTAAAAAGCCACTTGCAG

Basic information

species Glycine max
transcript GLYMA19G43690.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G43690.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G006477_T02 (Zea mays), 3'ss of exon 3
gtatgtttccgtctccataatctc-------ataccttacctctggaatttt---tcttgtcatctcatg---atgttaa--caacttaacctg--------cagAGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACTATCTATCATGTAAAAAGCCACTTGCAG-----------------------
|||||| | |         || ||       |||  |||  |   |||   |   ||   |||||| |||    |||| |   | |||  | |         |||| |||||||| ||||||||| | || || ||||||||||| ||  | ||||| |||||||| ||||||||| |||||                       
gtatgtctgccctattggcatttcccctcaaatagtttaagttatgaaccctacatcacatcatctaatgcatgtgtttatttatcttttcttattcctattcagAAGCTACTCCTAAGGGTGTGCTAAAGCTTATGAAAGTTGATGGTTTGACTATATATCATGTCAAAAGCCACCTGCAGGTTTGCTGTTTAGCTTTCTAAGT

upper sequence: GLYMA19G43690.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G006477_T01 (Zea mays), 3'ss of exon 3
gtatgtttccgtctccataatctc-------ataccttacctctggaatttt---tcttgtcatctcatg---atgttaa--caacttaacctg--------cagAGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACTATCTATCATGTAAAAAGCCACTTGCAG
|||||| | |         || ||       |||  |||  |   |||   |   ||   |||||| |||    |||| |   | |||  | |         |||| |||||||| ||||||||| | || || ||||||||||| ||  | ||||| |||||||| ||||||||| |||||
gtatgtctgccctattggcatttcccctcaaatagtttaagttatgaaccctacatcacatcatctaatgcatgtgtttatttatcttttcttattcctattcagAAGCTACTCCTAAGGGTGTGCTAAAGCTTATGAAAGTTGATGGTTTGACTATATATCATGTCAAAAGCCACCTGCAG

upper sequence: GLYMA19G43690.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0036g01380.t01 (Vitis vinifera), 3'ss of exon 2
-----------------gtatgtttccgtctccataatctcataccttacctctggaatttttcttgtcatctcatgatg--ttaacaacttaacctgcagAGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACTATCTATCATGTAAAAAGCCACTTGCAG
                   || ||  | |||  ||    | |  |  ||     | |   |     ||| | |  || |   ||      ||||| | ||| ||| |||||||||||  | ||||| || ||||| ||||| || || || ||||||||||||||||||||  |||||
gtatgtagcactatcagagatattctcttcttgatgtgattaggctctaag---gaagcatgggccgtcgttttgtgttcacttttggttttaacttacagGGGCGACTCCAAAGGGAATCTTGAAGCTTATGAATGTTGAAGGTCTGACCATCTATCATGTAAAAAGCCATCTGCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401612|gb|EV269865.1|EV269865
EST:     ACTTCACGAGGCCTTTGTGGAAGCAGTTAATCAGCTTGGTGGTAGTGATA                         AGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACTA
genomic: ACTTCACGAGGCCTTTGTGGAAGCAGTTAATCAGCTTGGTGGTAGTGATAgtatgtttcc ... taacctgcagAGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACTA
EST: gi|15337669|gb|BI498325.1|BI498325
EST:     ACTTCACGAGGCCTTTGTGGAAGCAGTTAATCAGCTTGGTGGTAGTGATA                         AGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACTA
genomic: ACTTCACGAGGCCTTTGTGGAAGCAGTTAATCAGCTTGGTGGTAGTGATAgtatgtttcc ... taacctgcagAGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACTA
EST: gi|192303316|gb|FG997402.1|FG997402
EST:     ACTTCACGAGGCCTTTGTGGAAGCAGTTAATCAGCTTGGTGGTAGTGATA                         AGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACTA
genomic: ACTTCACGAGGCCTTTGTGGAAGCAGTTAATCAGCTTGGTGGTAGTGATAgtatgtttcc ... taacctgcagAGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttacctctggaatttttcttgtcatctcatgatgttaacaacttaacctgcagAGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGGGCCTTACTATCTATCATGTAAAAAGCCACTTGCAG
            aatttttctt  TA-rich tract