1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacatacatgtcttgttaagtttggcaatgattgcatgtttggttctcattggaagagctagccaagttaagaatttcttcttatgcattgaaatttgaaaaagtacttgtggtacttaaactttgattgaaagacataaagcctcaatctccaggcctcattgatggatgtttttactgatggtgcagTACCCTCCGAGTGGGATGATGCAGCAGGGAGCACAGTACATGCAGGCTCAACAACAGGCACAGCAGATGACACCACAACAACTAATGGCAGCACGCTCAT
species | Glycine max |
transcript | GLYMA19G43580.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTCTCAACCCCAACCACCCACCATGTCTGGTCAG TACCCTCCGAGTGGGATGATGCAGCAGGGAGCACAGTACATGCAGGCTCAAEST: gi|208301532|gb|GE100316.1|GE100316
genomic: ATTCTCAACCCCAACCACCCACCATGTCTGGTCAGgtacatacat ... gatggtgcagTACCCTCCGAGTGGGATGATGCAGCAGGGAGCACAGTACATGCAGGCTCAA
EST: GCTGCAATAGCTGATTCTCAACCCCAACCACCCAACCAATGTCTGGTCAG TACCCTCCGAGTGGGATGATGCAGCAGGGAGCACAGTACATGCAGGCTCAAEST: gi|298199270|gb|HO042633.1|HO042633
genomic: GCTGCAATAGCTGATTCTCAACCCCAACCACCC-ACC-ATGTCTGGTCAGgtacatacat ... gatggtgcagTACCCTCCGAGTGGGATGATGCAGCAGGGAGCACAGTACATGCAGGCTCAA
EST: TAGCTGCAATAGCTGATTCTCAACCCCAACCACCCACCATGTCTGGTCAG TACCCTCCGAGTGGGATGATGCAGCAGGGAGCACAGTACATGCAGGCTCAAEST: gi|193413224|gb|FK375989.1|FK375989
genomic: TAGCTGCAATAGCTGATTCTCAACCCCAACCACCCACCATGTCTGGTCAGgtacatacat ... gatggtgcagTACCCTCCGAGTGGGATGATGCAGCAGGGAGCACAGTACATGCAGGCTCAA
EST: TCAACCCCAACCACCTACCATGTCTGGTCAG TACCCTCCGAGTGGGATGATGCAGCAGGGAGCACAGTACATGCAGGCTCAAEST: gi|31561308|gb|CD487146.1|CD487146
genomic: TCAACCCCAACCACCCACCATGTCTGGTCAGgtacatacat ... gatggtgcagTACCCTCCGAGTGGGATGATGCAGCAGGGAGCACAGTACATGCAGGCTCAA
EST: TAGCTGCAATAGCTGATGCTCAACCCCAACCACCCACCATGTCTGGTCAG TACCCTCCGAGTGGGATGATGCAGCAGGGAGCACAGTACATGCAGGCTCAAEST: gi|20075691|gb|BQ094474.1|BQ094474
genomic: TAGCTGCAATAGCTGATTCTCAACCCCAACCACCCACCATGTCTGGTCAGgtacatacat ... gatggtgcagTACCCTCCGAGTGGGATGATGCAGCAGGGAGCACAGTACATGCAGGCTCAA
EST: TAGCTGCAATAGCTGATTCTCAACCCCAACCACCCACCATGTCTGGTCAG TACCCTCCGAGTGGGATGATGCAGCAGGGAGCACAGTACATGCAGGCTCAAEST: gi|298164608|gb|HO014253.1|HO014253
genomic: TAGCTGCAATAGCTGATTCTCAACCCCAACCACCCACCATGTCTGGTCAGgtacatacat ... gatggtgcagTACCCTCCGAGTGGGATGATGCAGCAGGGAGCACAGTACATGCAGGCTCAA
EST: TAGCTGCAATAGCTGATTCTCAACCCCAACCACCCACCATGTCTGGTCAG TACCCTCCGAGTGGGATGATGCAGCAGGGAGCGCAGTACATGCAGGCTCAAEST: gi|193464142|gb|FK427926.1|FK427926
genomic: TAGCTGCAATAGCTGATTCTCAACCCCAACCACCCACCATGTCTGGTCAGgtacatacat ... gatggtgcagTACCCTCCGAGTGGGATGATGCAGCAGGGAGCACAGTACATGCAGGCTCAA
EST: ACCCACCATGTCTGGTCAG TACCCTCCGAGTGGGATGATGCAGCAGGGAGCACAGTACATGCAGGCTCAA
genomic: ACCCACCATGTCTGGTCAGgtacatacat ... gatggtgcagTACCCTCCGAGTGGGATGATGCAGCAGGGAGCACAGTACATGCAGGCTCAA
acataaagcctcaatctccaggcctcattgatggatgtttttactgatggtgcagTACCCTCCGAGTGGGATGATGCAGCAGGGAGCACAGTACATGCAGGCTCAACAACAGGCACAGCAGATGACACCACAACAACTAATGGCAGCACGCTCAT
tactgat putative branch site (score: 2)
atgttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatacatgtcttgttaagtttggcaatgattgcatgtttggttctcattggaagagctagccaagttaagaatttcttcttatgcattgaaatttgaaaaagtacttgtggtacttaaactttgattgaaagacataaagcctcaatctccaggcctcattgatggatgtttttactgatggtgcagTACCCTCCGAGTGGGATGATGCAGCAGGGAGCACAGTACATGCAGGCTCAACAACAGGCACAGCAGATGACACCACAACAACTAATGGCAGCACGCTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG