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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattggcttctggcttgctgtttatgtgaaatgttcgatttgctgtggtcactttactttgtattttttatatctgtagtttaagataatctataaattaagctgtctgtcttcctttctcctttgttatcctcatgccttttgagttcttgcattcagGTAGGCATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTGAAAAATGAG

Basic information

species Glycine max
transcript GLYMA19G42180.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42180.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G030072_T03 (Zea mays), 3'ss of exon 1
gtaatt--ggcttctggcttgctg-tttatgtgaaatgttcgatttgctgtggtcacttt------actttgtattttttatat-ctgtagtttaagataatctataaa-----ttaagc-----tgtc-tgtcttcctttctcctttgttatc--ctcatgcctt--ttgagttcttgcatt---cagGTAGGCATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTGAAAAATGAG
||||    |  |  |   ||| ||  ||  || || | ||     |  || ||||| |        | ||||  || || || | ||     ||| | ||  ||||||      || |||     | || |||| || |   | || | |  ||   |  | | ||  |||| |   || |||   ||||| || |||||||  ||||||||||| || ||||||||||||||||   |||||| ||||
gtaagcaagattgttcaattggtgacttcagtcaagtatttccagtattggggtcagtaccggtagaatttggcttattcatgttcttctaattagggtagactataaggtctctttagcatttgtatcatgtcgtcatggttgctatatagtcaaatagttctttaattgattgtctgtatttgtcagGTCGGGATGGAGAGCGAAGGTTTTGCAATCTATGATGCAATGATGCGTATGAAAACTGAG

upper sequence: GLYMA19G42180.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0060g02160.t01 (Vitis vinifera), 3'ss of exon 3
gtaattggcttctggcttgctgtttatgtgaaatgttcgatttgctgtggtcactttactttgtattttttatatctgtagtttaagataatctataaattaagctgtctgtcttcctttctcctttgttatcctcatgccttttgagttcttgc-attcagGTAGGCATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTGAAAAATGAG
                                                            |  | | || || | || |   || |  |  | |    || ||  | |    | |   || |    |  | | | ||||  ||   | |  |||   ||||||| || |||||||| || |||||||| || |||||||||||||||||||| |||||||||
------------------------------------------------------------tgttgtgttctagagctattcatttaactt-tttgggcatcaatttatactacattaattttaaccttctgttc-catgggttcaaattgtttgttgttcagGTTGGGATGGAGACTGAGGGTTTTGCTATCTATGATGCAATGATGCAGTTAAAAAATGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5760326|gb|AI965753.1|AI965753
EST:     TCTATATTTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACG                         GTAGGCATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTG
genomic: TCTATATTTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACGgtaattggct ... ttgcattcagGTAGGCATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTG
EST: gi|213591486|gb|DB973863.1|DB973863
EST:     TCTATATTTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACG                         GTAGGCATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGC
genomic: TCTATATTTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACGgtaattggct ... ttgcattcagGTAGGCATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGC
EST: gi|254314926|gb|GR829919.1|GR829919
EST:     TCTATATTTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACG                         GTAGGCATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTG
genomic: TCTATATTTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACGgtaattggct ... ttgcattcagGTAGGCATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTG
EST: gi|213597711|gb|DB962165.1|DB962165
EST:     TCTATATTTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACG                         GTAGGCATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTG
genomic: TCTATATTTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACGgtaattggct ... ttgcattcagGTAGGCATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTG
EST: gi|213619505|gb|DB967751.1|DB967751
EST:     TCTATATNTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACG                         GTAGGCATGGAGACAGAAGGTTTTGCCATTTATGATGC
genomic: TCTATATTTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACGgtaattggct ... ttgcattcagGTAGGCATGGAGACAGAAGGTTTTGCCATTTATGATGC
EST: gi|213614567|gb|DB972835.1|DB972835
EST:     TCTATATNTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACG                         GTAGGCATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTG
genomic: TCTATATTTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACGgtaattggct ... ttgcattcagGTAGGCATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctgtcttcctttctcctttgttatcctcatgccttttgagttcttgcattcagGTAGGCATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTGAAAAATGAG
                                          ttcttgc  CT-rich tract
                  tttgttat  TA-rich tract