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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttactttaaaccatatttcataattcattttctccattaaatatgcttatgtctccataataatagaccttttttttattttattttttaaatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTTGTCTTCCAG

Basic information

species Glycine max
transcript GLYMA19G41420.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213616919|gb|DB959231.1|DB959231
EST:     GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG                         ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: gi|13252730|gb|BG363633.1|BG363633
EST:     GAAATGGTCAACCGAAGCAG                         ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
genomic: GAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: gi|15286620|gb|BI470511.1|BI470511
EST:     GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG                         ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: gi|254328746|gb|GR833118.1|GR833118
EST:     GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG                         ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: gi|27809424|gb|CB063846.1|CB063846
EST:     GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG                         ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCA
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCA
EST: gi|209725616|gb|BW663105.1|BW663105
EST:     GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG                         ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: gi|6913877|gb|AW395407.1|AW395407
EST:     GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG                         ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: gi|213591319|gb|DB973808.1|DB973808
EST:     GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG                         ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: gi|298165875|gb|HO008846.1|HO008846
EST:     GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAG                         ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
genomic: GACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
EST: gi|15814589|gb|BI786864.1|BI786864
EST:     GTCAACCGAAGCAG                         ACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT
genomic: GTCAACCGAAGCAGgtataccttc ... aatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatgtctccataataatagaccttttttttattttattttttaaatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTTGTCTTCCAG
           ataataatagaccttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttactttaaaccatatttcataattcattttctccattaaatatgcttatgtctccataataatagaccttttttttattttattttttaaatatttcagACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTTGTCTTCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA