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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggaagatataatcccaaagtgaaagatagttcacacaaagGATGCCATCAATTCAGCCTTGAAAGACCCTGCCAAACGTGAAAGG

Basic information

species Glycine max
transcript GLYMA19G39880.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G39880.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0005g00510.t01 (Vitis vinifera), 3'ss of exon 5
--------------------------------------------------------------------------------------------------------------------------------------------------------gtggaagatata-----atcccaaagtgaaagata-gttcacacaaagGATGCCATCAATTCAGCCTTGAAAGACCCTGCCAAACGTGAAAGG--
                                                                                                                                                        |  |||| |  |     ||||   |||     |||  || ||| ||  |        ||| |     || ||||   |||| |    | | |   
gtaaatgcaagatgattgtgtgatcaactcccaaattccacaacatgctttctattggttggaatttggaaaacatcttttttttccagctttgctaccaagaaattgaaccctgggtattcctaattaatgtatgaaaatggtcagATATCGGAGAAGGTGAAGCCACATCCTGTAGTTGTGAATATATTAACAAAAGTGGAAGAGATAATACCAAAGTGGAAGATAGTGCCCACAAAGGATGTAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggaagatataatcccaaagtgaaagatagttcacacaaagGATGCCATCAATTCAGCCTTGAAAGACCCTGCCAAACGTGAAAGG
                                          aagatataat  TA-rich tract