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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgttacgttattcagatttattatggttttagacttgtaatttttaaatttcttttttatgctaagctgtttaaggtgggttcacagGTTTACAATGGAAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCTCATGTGAAAAAATATGAG

Basic information

species Glycine max
transcript GLYMA19G39210.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G39210.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os10g27230.1 (Oryza sativa), 3'ss of exon 4
---gttgttacgttattcagatttattatggttttagacttgtaatttttaaatttcttttttatgctaagctgtttaaggtgggttcacagGTTTACAATGGAAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCTCATGTGAAAAAATATGAG
     | | ||   ||   | | ||||||  |     | || ||   || || ||  | ||| || ||     | || | ||   || | |||| || | ||||     | || | || ||||| ||||| || |||||||||||||||| |||||| || || ||||||||||||
gtatatttgactgcatctggttctattataatac-gcatttatacgcttcaatttcttatttgattct-----gcttcatgtt--tttaaagGTATATACTGGAGCTCCTCATGCCATCGATGGCTGTGCCACCTTTTTCCGTAGAGACAAATTTTCACACGTTAAAAAATATGAG

upper sequence: GLYMA19G39210.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g07020.t01 (Vitis vinifera), 3'ss of exon 3
gttgttacgttattcagatttattatggttttagacttgtaatttttaaatttcttttttatgctaagctgtttaaggtgggttcacagGTTTACAATGGAAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCTCATGTGAAAAAATATGAG
||   |     |||    |  |||||| |  |||  |   || || |  || |  ||  |    | | ||  || |  |   ||  |||||||||| ||| || ||  ||||||||||||| |||||||||||||| || || || |||||||| ||||| ||||||||||||
gtacatgatgaatttctttgcattatgatagtagcttctgaaattctgtatgttattaatcctttgatcttgttgactt---tttgcagGTTTACACTGGTAATATCCATACAATTGATGGTTGTGCAACATTTTTTCGCAGGGATAGATTTTCACATGTCAAAAAATATGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6501991|gb|AW203364.1|AW203364
EST:     AACTAGACAAACATGGCTATTATGGTTTTTACAAAAGGAAAACAAATGAG                         GTTTACAATGGAAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGT
genomic: AACTAGACAAACATGGCTATTATGGTTTTTACAAAAGGAAAACAAATGAGgttgttacgt ... gggttcacagGTTTACAATGGAAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGT
EST: gi|208248499|gb|GE048140.1|GE048140
EST:     TATGGTTTTTACAAAAGGAAAACAAATGAG                         GTTTACAATGGAAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGT
genomic: TATGGTTTTTACAAAAGGAAAACAAATGAGgttgttacgt ... gggttcacagGTTTACAATGGAAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttgtaatttttaaatttcttttttatgctaagctgtttaaggtgggttcacagGTTTACAATGGAAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCTCATGTGAAAAAATATGAG
     taatttttaaatttct  TA-rich tract