Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcctattcttttgcattgtcttttaaatttaagttgttaagatattgcagttaatagagcatgaacatggatttgaaattgataattttttcctcttattgcagGTAATTAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAATAGGACTTGA

Basic information

species Glycine max
transcript GLYMA19G38130.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G38130.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g03130.t01 (Vitis vinifera), 3'ss of exon 3
----gtgagtcct--attcttttgcattgtcttttaaatttaagttgttaagatattgcagttaatagagca-tgaacatgga--tttgaaattgataattttttcctcttattgcagGTAATTAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAATAGGACTTGA----------------------------------------
    || | |  |  ||  | ||  ||| |  | | ||| |   || || |    ||| |  | |||  | | | | |   |   |||| |||||||   |      | |   ||||||| |||||||||||||||||||| |||||||| || ||||| || || |   |||                                             
gtaggttaatttttcatcttgttttatttttctcttaatatt--ttatttaccatttggatatgatactgtaattagctcagccttttgcaattgatg--tcacaattgtacctgcagGTTATTAGAGGAAATAGTGTGGTTACTGTTGAAGCTCTTGAGCCAGTAAGCCGGATGCAGTGAATTGATTTTTGTATCAATGCCTAATGCTGTATCTACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7042559|gb|AW472453.1|AW472453
EST:     ACAACACTGTGGAAGTGAATGGGAATGAGAAAAATGACATAGGGATGGTG                         GTGATTAGAGGAAATAGTGTGGTCACTGTTGGGGCGCTTGAACACGTG
genomic: ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGgtgagtccta ... cttattgcagGTAATTAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTG
EST: gi|208259172|gb|GE055450.1|GE055450
EST:     ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTG                         GTAATTAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAT
genomic: ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGgtgagtccta ... cttattgcagGTAATTAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaatagagcatgaacatggatttgaaattgataattttttcctcttattgcagGTAATTAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAATAGGACTTGA
                           aattgat  putative branch site (score: 4)
                                    ttttttcctcttattg  putative PPT
                     atttgaaattgataat  TA-rich tract