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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catacaaattttctctgcagttggtttggtttatattgctgatattggagtttgtatctgcttatattataacttttttttggcttattgacttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG

Basic information

species Glycine max
transcript GLYMA19G37230.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6454511|gb|AW185194.1|AW185194
EST:     CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAAT                         CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttca ... acttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: gi|151403740|gb|EV273550.1|EV273550
EST:     CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAAT                         CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttca ... acttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: gi|151404632|gb|EV274446.1|EV274446
EST:     CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAAT                         CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttca ... acttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: gi|254332260|gb|GR843844.1|GR843844
EST:     CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAAT                         CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttca ... acttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: gi|13563506|gb|BG551726.1|BG551726
EST:     CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAAT                         CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttca ... acttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: gi|21888222|gb|BQ741444.1|BQ741444
EST:     CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAAT                         CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttca ... acttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggagtttgtatctgcttatattataacttttttttggcttattgacttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
                                        tattgac  putative branch site (score: 2)
                ttatattataactttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
catacaaattttctctgcagttggtttggtttatattgctgatattggagtttgtatctgcttatattataacttttttttggcttattgacttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA