1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...catacaaattttctctgcagttggtttggtttatattgctgatattggagtttgtatctgcttatattataacttttttttggcttattgacttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
species | Glycine max |
transcript | GLYMA19G37230.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAAT CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGEST: gi|151403740|gb|EV273550.1|EV273550
genomic: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttca ... acttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAAT CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGEST: gi|151396713|gb|EV266586.1|EV266586
genomic: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttca ... acttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: CGTATCAACAGTTTTTACATTCACTTGATCAGGTCAAGATTCAAACTAAT CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGEST: gi|151404632|gb|EV274446.1|EV274446
genomic: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttca ... acttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAAT CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGEST: gi|13563506|gb|BG551726.1|BG551726
genomic: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttca ... acttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAAT CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGEST: gi|21888222|gb|BQ741444.1|BQ741444
genomic: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttca ... acttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAAT CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttca ... acttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
tggagtttgtatctgcttatattataacttttttttggcttattgacttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
tattgac putative branch site (score: 2)
ttatattataactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catacaaattttctctgcagttggtttggtttatattgctgatattggagtttgtatctgcttatattataacttttttttggcttattgacttgatcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
catacaa
- - - - - - ctctgca
- - - - - - - - - - - ggtttgg
- - - - - - - - - - - - - - - - - - tgctgat
- - - - - - - - - - - - - - - - - - - - - - - -gagtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgctt