1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aatatacgtgaattctgttataaaaatatggtccaaaattaagcaacactgtcatgcaagtgctggctttgatatatatataattttcatttaaaaccagGAAAGTGGTGGCCACCTACGCAGAAGAAACCAAACATTTGTTCCTGGTGGTAATGGAAGCCATCCTAGAGAGCTTAGGAATTGTGGAAGCCAACCAAGAA
species | Glycine max |
transcript | GLYMA19G37210.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCTTACCAGATTTACTCCTCCATTGGCCTGCTTCACCAGTGGACTTTCG GAAAGTGGTGGCCACCTACGCAGAAGAA-CCAAACATTTGTTCCTGGGTGGEST: gi|192327284|gb|FK017761.1|FK017761
genomic: CCCTTACCAGATTTACTCCTCCATTGGCCTGCTTCACCAGTGGACTTTCGgtgagtagtg ... ttaaaaccagGAAAGTGGTGGCCACCTACGCAGAAGAAACCAAACATTTGTTCCTGG-TGG
EST: CCCTTACCAGATTTACTCCTCCATTGGCCTGCTTCACCAGTGGACTTTCG GAAAGTGGTGGCCACCTACGCAGAAGAAACCAAACATTTGTTCCTGGTGGT
genomic: CCCTTACCAGATTTACTCCTCCATTGGCCTGCTTCACCAGTGGACTTTCGgtgagtagtg ... ttaaaaccagGAAAGTGGTGGCCACCTACGCAGAAGAAACCAAACATTTGTTCCTGGTGGT
acactgtcatgcaagtgctggctttgatatatatataattttcatttaaaaccagGAAAGTGGTGGCCACCTACGCAGAAGAAACCAAACATTTGTTCCTGGTGGTAATGGAAGCCATCCTAGAGAGCTTAGGAATTGTGGAAGCCAACCAAGAA
ctttgat putative branch site (score: 5)
ttttcattt putative PPT
tttgatatatatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatacgtgaattctgttataaaaatatggtccaaaattaagcaacactgtcatgcaagtgctggctttgatatatatataattttcatttaaaaccagGAAAGTGGTGGCCACCTACGCAGAAGAAACCAAACATTTGTTCCTGGTGGTAATGGAAGCCATCCTAGAGAGCTTAGGAATTGTGGAAGCCAACCAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - tgaattc
- - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - ccaaaat
- - - - - - - - - - - - - - - - - - - - - gcaacac
- - - - - - - - - - - - - - - - - - - - - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctggc