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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttaatgtctgtaatcttttatgacccatcaaaatccatgggcttgttagtggtgatattgagttttggcatgcagGTTTTGTTGCACATACTCAGGGCTGGCTATTTCTTGCACAAAAAGGGGCAAAATAGTGCAAATGGGGATCTAAAAGATTTTCCAATTCGAACAATATATT

Basic information

species Glycine max
transcript GLYMA19G36860.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14258476|gb|BG881384.1|BG881384
EST:     TATTGAGGAGGTTGCCTTCAGTTTCAATGGAGGAAAGGATTCAACA                         GTTTTGTTGCACATACTCAGGGCTGGCTATTTCTTGCATAAAAAGGGGCAA
genomic: TATTGAGGAGGTTGCCTTCAGTTTCAATGGAGGAAAGGATTCAACGgtaagtttta ... tggcatgcagGTTTTGTTGCACATACTCAGGGCTGGCTATTTCTTGCACAAAAAGGGGCAA
EST: gi|7691690|gb|AW759813.1|AW759813
EST:     TATTGAGGAGGTTGCCTTCAGTTTCAATGGAGGAAAGGATTCAACG                         GTTTTGTTGCACATACTCAGGGCTGGCTATTTCTTGCACAAAAAGGGGCAA
genomic: TATTGAGGAGGTTGCCTTCAGTTTCAATGGAGGAAAGGATTCAACGgtaagtttta ... tggcatgcagGTTTTGTTGCACATACTCAGGGCTGGCTATTTCTTGCACAAAAAGGGGCAA
EST: gi|209709323|gb|BW680988.1|BW680988
EST:     TATTGAGGAGGTTGCCTTCAGTTTCAATGGAGGAAAGGATTCAACG                         GTTTTGTTGCACATACTCAGGGCTGGCTATTTCTTGCACAAAAAGGGGCAA
genomic: TATTGAGGAGGTTGCCTTCAGTTTCAATGGAGGAAAGGATTCAACGgtaagtttta ... tggcatgcagGTTTTGTTGCACATACTCAGGGCTGGCTATTTCTTGCACAAAAAGGGGCAA
EST: gi|192299088|gb|FG990402.1|FG990402
EST:     TATGGAGGAGGTTGCCTTCAGTTTCAATGGAGGAAAGGATTCAACG                         GTTTTGTTGCACATACTCAGGGCTGGCTATTTCTTGCACAAAAAGGGGCAA
genomic: TATTGAGGAGGTTGCCTTCAGTTTCAATGGAGGAAAGGATTCAACGgtaagtttta ... tggcatgcagGTTTTGTTGCACATACTCAGGGCTGGCTATTTCTTGCACAAAAAGGGGCAA
EST: gi|213614119|gb|DB964891.1|DB964891
EST:     TATTGAGGAGGTTGCCTTCAGTTTCAATGGAGGAAAGGATTCAACG                         GTTTTGTTGCACATACTCAGGGCTG
genomic: TATTGAGGAGGTTGCCTTCAGTTTCAATGGAGGAAAGGATTCAACGgtaagtttta ... tggcatgcagGTTTTGTTGCACATACTCAGGGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgacccatcaaaatccatgggcttgttagtggtgatattgagttttggcatgcagGTTTTGTTGCACATACTCAGGGCTGGCTATTTCTTGCACAAAAAGGGGCAAAATAGTGCAAATGGGGATCTAAAAGATTTTCCAATTCGAACAATATATT
      atcaaaat  TA-rich tract