Sequence
atgc intronic sequence ATGC exonic sequencegttagtaaccatttgtcttctacattatatcctacaaaaaatagtttttatgttaaaggttaatgaatacatcatacttctaattttgttaattattttagGTAGAACATGTTAGAGCTGAAAGGAATCTTCTGGCAGAGGTTGACAACAATTGCATAGTTAAACTTTATTGTTCTTTTCAAGATGACGAATATTTGTATC
Basic information
species | Glycine max |
transcript | GLYMA19G34920.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G34920.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0005g03690.t01 (Vitis vinifera), 3'ss of exon 3
gttagtaaccatttgtcttcta-cattatatcctacaaaaaatagtttttatgttaaaggttaatgaatacatcatacttctaattttgttaattattttagGTAGAACATGTTAGAGCTGAAAGGAATCTTCTGGCAGAGGTTGACAACAATTGCATAGTTAAACTTTATTGTTCTTTTCAAGATGACGAATATTTGTATC
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--------------gtattacatctttctggtctgccagatgt----ttggtgattttgcccaatatgtttgttgccagttgacactta--aatgattttagGTGGAGCATGTTAAAGCTGAAAGGAATCTGCTTGCAGAGGTGGACAGCAATTGCATTGTTAAACTTTACTGTTCTTTCCAAGATGATGAGTTTCTTTATC
upper sequence: GLYMA19G34920.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ28086 (Selaginella moellendorffii), 3'ss of exon 3
gttagtaaccatttgtcttctacattatatcctacaaaaaatagtttttatgttaaaggttaatgaatacatcatacttctaattttgttaattattttagGTAGAACATGTTAGAGCTGAAAGGAATCTTCTGGCAGAGGTTGACAACAATTGCATAGTTAAACTTTATTGTTCTTTTCAAGATGACGAATATTTGTATC--------------
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-------------------------------------------gttattagactcttg-ccaatcactccg--gtgctgatgctctcgt-gattttttcaggtggagcatgttagAGCAGAGCGTAATCTCCTAGCAGAGGTTGACAGTAATTGTATAGTGAAACTCTTTTGTTCCTTTCAAGACGATGAATATTTGTATCTCATCATGGAGTAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatgttaaaggttaatgaatacatcatacttctaattttgttaattattttagGTAGAACATGTTAGAGCTGAAAGGAATCTTCTGGCAGAGGTTGACAACAATTGCATAGTTAAACTTTATTGTTCTTTTCAAGATGACGAATATTTGTATC
ttatttt CT-rich tract
aatacatcatacttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagtaaccatttgtcttctacattatatcctacaaaaaatagtttttatgttaaaggttaatgaatacatcatacttctaattttgttaattattttagGTAGAACATGTTAGAGCTGAAAGGAATCTTCTGGCAGAGGTTGACAACAATTGCATAGTTAAACTTTATTGTTCTTTTCAAGATGACGAATATTTGTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG