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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacatttcattctccagagattgcttgatattattagatggaactaagacaattcatagtgtattgaaattttcttttgcttaagcatttaatttgttgtgttgttcttgataacatagGTTCCTATCAAGTGGCCCAAAAGCAGAGACCAGGTGTGGAAGGCAAATATACCTCATACCCATCTAGCAACTGAAAAATCTGACCAGAACTGGATGGTTG

Basic information

species Glycine max
transcript GLYMA19G34890.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G34890.2 (Glycine max), 3'ss of exon 3
lower sequence: AT4G14360.2 (Arabidopsis thaliana), 3'ss of exon 3
gtgacatttcattctccagagattgcttgatattattagatggaactaa-gacaattcatagtgtattgaaattttcttttgcttaagcatttaatttgttgtgttgttcttgataacatagGTTCCTATCAAGTGGCCCAAAAGCAGAGACCAGGTGTGGAAGGCAAATATACCTCATACCCATCTAGCAACTGAAAAATCTGACCAGAACTGGATGGTTG
                                         |   |||  || |  | |||  || ||     | |  || | |          |  |||| | |  | |   ||    |||||||| || || ||||| |||||||||||  | |||||||| |  || ||||||||||| ||||| |||  ||| || |||||||| |||||||||||||
-----------------------------------------gtgtctatcgatatgttatacagttttatcgatatgattagttacgatgacataactgttttctcttccaatatgttttagGTTCCGATTAAATGGCCAAAAAGCAGAGATGAAGTGTGGAAAGTGAACATACCTCATACTCATCTTGCACATGAGAAGTCTGACCAAAACTGGATGGTTG

upper sequence: GLYMA19G34890.2 (Glycine max), 3'ss of exon 3
lower sequence: AT1G04430.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgacatttcattctccagagattgcttgatattattagatggaactaagacaattcatagtgtattgaaattttcttttgcttaagcatttaatttgttgtgttgttcttgataacatagGTTCCTATCAAGTGGCCCAAAAGCAGAGACCAGGTGTGGAAGGCAAATATACCTCATACCCATCTAGCAACTGAAAAATCTGACCAGAACTGGATGGTTG
              | |     ||||||  |  | ||   | ||  |  ||       | ||   | |  |  || | ||| |  |   |||  ||  |||| ||| | |   |    ||||||||||| |||||||| || || |||||  | |||||||| ||||| |||||||| || || || ||||  || || ||||| ||||||||||||||||
-------------gtgctatatttgctttcttgttttgctttgatttgtgat------tggttcctggttacattgtcttgat--attgttttgttctttgtattgatttgcgtt---tagGTTCCTATTAAGTGGCCTAAGAGTAGAGATGAAGTGTGGAAAGCAAACATACCTCACACTCACCTTGCAAAAGAGAAGTCTGATCAGAACTGGATGGTTG

upper sequence: GLYMA19G34890.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0005g03630.t01 (Vitis vinifera), 3'ss of exon 2
gtgacatttcattctccagagattgcttgatattattagatggaactaagacaattcatagtgtattgaa-attttcttttgcttaagcatttaatttgttgtgttgttcttgataacatagGTTCCTATCAAGTGGCCCAAAAGCAGAGACCAGGTGTGGAAGGCAAATATACCTCATACCCATCTAGCAACTGAAAAATCTGACCAGAACTGGATGGTTG
  |  | |   | ||    |  ||  |||| ||       ||| || |||  | || ||| ||| || |  ||   | | | | ||||   | | | | || || |||    | ||||  |||| || ||||||||||| |||||||||||  |||||||||| || ||||||||||||||||| || |||||||| || ||||||||||||||||||||||
--gtgagtctgtgctt---aagttttttgaaat-----attgggaccaaggaagtttatattgttttcattatccacatgtacctaag--atgattctcttctgctgtgggcggtaac--agGTCCCAATCAAGTGGCCTAAAAGCAGAGATGAGGTGTGGAAAGCCAATATACCTCATACCCACCTTGCAACTGAGAAGTCTGACCAGAACTGGATGGTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207801511|gb|GD773875.1|GD773875
EST:     CACCTGATAGGAGATACAATTGTTTAATTCCTCCTCCTCCAGGGTACAAG                         GTTCCTATCAAGTGGCCCAAAAGCAGAGACCAGGTGTGGAAGGCAAATATA
genomic: CACCTGATAGGAGATACAATTGTTTAATTCCTCCTCCTCCAGGGTACAAGgtgacatttc ... gataacatagGTTCCTATCAAGTGGCCCAAAAGCAGAGACCAGGTGTGGAAGGCAAATATA
EST: gi|209700860|gb|BW683090.1|BW683090
EST:     CACCTGATAGGAGATACAATTGTTTAATTCCTCCTCCTCCAGGGTACAAG                         GTTCCTATCAAGTGGCCCAAAAAGCAGAGACCAGGTGTGGAAGGCAAATAT
genomic: CACCTGATAGGAGATACAATTGTTTAATTCCTCCTCCTCCAGGGTACAAGgtgacatttc ... gataacatagGTTCCTATCAAGTGGCCCAAAA-GCAGAGACCAGGTGTGGAAGGCAAATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaattttcttttgcttaagcatttaatttgttgtgttgttcttgataacatagGTTCCTATCAAGTGGCCCAAAAGCAGAGACCAGGTGTGGAAGGCAAATATACCTCATACCCATCTAGCAACTGAAAAATCTGACCAGAACTGGATGGTTG
                                            tgataac  putative branch site (score: 2)
                ttaagcatttaattt  TA-rich tract