1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgttttgctgcatgaatgctcagtgtttgtgaaataaaaatataacaatactaaattattcaattcttctaatatcatggtgcatttttactatgttcagACAGATAGAGCTGCCATGTTAGATGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTGAAG
species | Glycine max |
transcript | GLYMA19G34360.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAGCAGAAAGAATCAGGGCATTGCAAGAACTGGTTCCAAGTGTCAACAAG ACAGATAGAGCTGCCATGTTAGATGAAATTGTGGATTATGTCAAGTTCTTAEST: gi|254322969|gb|GR835684.1|GR835684
genomic: TAGCAGAAAGAATCAGGGCATTGCAAGAACTGGTTCCAAGTGTCAACAAGgtatgcgatt ... ctatgttcagACAGATAGAGCTGCCATGTTAGATGAAATTGTGGATTATGTCAAGTTCTTA
EST: TAGCAGAAAGAATCAGGGCATTGCAAGAACTGGTTCCAAGTGTCAACAAG ACAGATAGAGCTGCCATGTTAGATGAAATTGTGGATTATGTCAAGTTCTTAEST: gi|19453220|gb|BM954630.1|BM954630
genomic: TAGCAGAAAGAATCAGGGCATTGCAAGAACTGGTTCCAAGTGTCAACAAGgtatgcgatt ... ctatgttcagACAGATAGAGCTGCCATGTTAGATGAAATTGTGGATTATGTCAAGTTCTTA
EST: TAGCAGAAAGAATCAGGGCATTGCAAGAACTGGTTCCAAGTGTCAACAAG ACAGATAGAGCTGCCATGTTAGATGAAATTGTGGATTATGTCAAGTTCTTA
genomic: TAGCAGAAAGAATCAGGGCATTGCAAGAACTGGTTCCAAGTGTCAACAAGgtatgcgatt ... ctatgttcagACAGATAGAGCTGCCATGTTAGATGAAATTGTGGATTATGTCAAGTTCTTA
caatactaaattattcaattcttctaatatcatggtgcatttttactatgttcagACAGATAGAGCTGCCATGTTAGATGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTGAAG
tttttact CT-rich tract
taaattattcaattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttttgctgcatgaatgctcagtgtttgtgaaataaaaatataacaatactaaattattcaattcttctaatatcatggtgcatttttactatgttcagACAGATAGAGCTGCCATGTTAGATGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTGAAG
tgttttg
- - - - -gcatgaa
- - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - -aacaatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattt