1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgcttcatagttaattagtcccttggtaccataagtataagatgtgtgtcatgttcatgttttggtttcctttatgtatttattgtctttcatatgcagCTCTAAGAGGGGCAGCAACCTTGAAAGCAAGAGCTTTGAAGGAGGTATGGAATATTGCCACTGTGACACCACTAGAAAGAGGCATAGGGGGAATTGGACT
species | Glycine max |
transcript | GLYMA19G34180.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTCCGTTCTCATGATGATATCACTACTCTTACTGCTGCAGCTGCCACAG CTCTAAGAGGGGCAGCAACCTTGAAAGCAAGAGCTTTGAAGGEST: gi|207768984|gb|GD741117.1|GD741117
genomic: TGTCCGTTCTCATGATGATATCACTACTCTTACTGCTGCAGCTGCCACAGgtagagtttt ... tcatatgcagCTCTAAGAGGGGCAGCAACCTTGAAAGCAAGAGCTTTGAAGG
EST: TGTCCGTTCTCATGATGATATCACTACTCTTACTGCTGCAGCTGCCACAG CTCTAAGAGGGGCAGCAACCTTGAAAGCAAGAGCTTTGAAGGAGGTATGGA
genomic: TGTCCGTTCTCATGATGATATCACTACTCTTACTGCTGCAGCTGCCACAGgtagagtttt ... tcatatgcagCTCTAAGAGGGGCAGCAACCTTGAAAGCAAGAGCTTTGAAGGAGGTATGGA
tgtgtcatgttcatgttttggtttcctttatgtatttattgtctttcatatgcagCTCTAAGAGGGGCAGCAACCTTGAAAGCAAGAGCTTTGAAGGAGGTATGGAATATTGCCACTGTGACACCACTAGAAAGAGGCATAGGGGGAATTGGACT
ttgtctttc CT-rich tract
tttatgtatttattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcttcatagttaattagtcccttggtaccataagtataagatgtgtgtcatgttcatgttttggtttcctttatgtatttattgtctttcatatgcagCTCTAAGAGGGGCAGCAACCTTGAAAGCAAGAGCTTTGAAGGAGGTATGGAATATTGCCACTGTGACACCACTAGAAAGAGGCATAGGGGGAATTGGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
-tgcttca
- - - - - - - - - -tcccttg
- - - - - - - - - - - - - - - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - catgttc