1 5' 3' | 2 5' 3' | 3 5' 3' |
gtattgtatattatttgactttcactagaatgtttatcagaggccaattatgttcaggttgactgttatctaggaatatctggttctcaaagttttgattttatttacagGGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTCGTGGTCGTTAAGATGCACATCACAAAATTTGTGGCATTTGCTTGTACCA
species | Glycine max |
transcript | GLYMA19G33700.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG GGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTCEST: gi|12691282|gb|BG157618.1|BG157618
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttacagGGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTC
EST: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG GGAAGCCTNTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTCEST: gi|298184695|gb|HO029908.1|HO029908
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttacagGGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTC
EST: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG GGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTCEST: gi|6913873|gb|AW395403.1|AW395403
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttacagGGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTC
EST: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG GGAAGCCTTTGCGGAGAGGGCGGGGACTAGGACGTGAGCGTGGCCGTGGTCEST: gi|58014996|gb|CX701738.1|CX701738
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttacagGGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTC
EST: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG GGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTCEST: gi|14126660|gb|BG791098.1|BG791098
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttacagGGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTC
EST: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG GGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTCEST: gi|9902628|gb|BE611526.1|BE611526
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttacagGGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTC
EST: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG GGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTCEST: gi|298163152|gb|HO011885.1|HO011885
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttacagGGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTC
EST: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG GGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTCEST: gi|18848707|gb|BM567819.1|BM567819
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttacagGGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTC
EST: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG GGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTCEST: gi|19268677|gb|BM884933.1|BM884933
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttacagGGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTC
EST: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG GGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTCEST: gi|14126440|gb|BG790878.1|BG790878
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttacagGGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTC
EST: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG GGAAGCCTTTGGGGAGAGGGCGGGGACGAGEST: gi|192311957|gb|FK004560.1|FK004560
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttacagGGAAGCCTTTGGGGAGAGGGCGGGGACGAG
EST: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG GGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttacagGGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTC
aggttgactgttatctaggaatatctggttctcaaagttttgattttatttacagGGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTCGTGGTCGTTAAGATGCACATCACAAAATTTGTGGCATTTGCTTGTACCA
ttttgat putative branch site (score: 4)
ttttattt CT-rich tract
tcaaagttttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgtatattatttgactttcactagaatgtttatcagaggccaattatgttcaggttgactgttatctaggaatatctggttctcaaagttttgattttatttacagGGAAGCCTTTGGGGAGAGGGCGGGGACGAGGACGTGGGCGTGGCCGTGGTCGTGGTCGTTAAGATGCACATCACAAAATTTGTGGCATTTGCTTGTACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG