1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatggtttttttaggtttacagagcagttggtgcacttgcatgttattggattccaaatttgtgccttttcagtgaccaaatacttttagttaaactgaaggattaaaagaaattattaaattgatctcacttgagaatgttttgttggttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGGGAGTAGCCAGGAGGCAGAGGAATTTGCCTGTACAAGGTACAAGGCTGA
species | Glycine max |
transcript | GLYMA19G33650.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGEST: gi|23726942|gb|BU761482.1|BU761482
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
EST: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAG GTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
genomic: TTCCAATTACACCCAGTTAACTGAGCTTTACAGCAAATATAAAGACAGAGgtatggtttt ... ttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCG
taaaagaaattattaaattgatctcacttgagaatgttttgttggttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGGGAGTAGCCAGGAGGCAGAGGAATTTGCCTGTACAAGGTACAAGGCTGA
aaattattaaattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtttttttaggtttacagagcagttggtgcacttgcatgttattggattccaaatttgtgccttttcagtgaccaaatacttttagttaaactgaaggattaaaagaaattattaaattgatctcacttgagaatgttttgttggttgatctcagGTCTTGAGATACTGGCATTTCCATGCAACCAGTTTCTGAAACAAGAGCCCGGGAGTAGCCAGGAGGCAGAGGAATTTGCCTGTACAAGGTACAAGGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA