1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttttctgaatacatgttatcacaaatgttcttgtgacctcatgatcctaaagcctaatataaagatccccacttgacatgttgaagtttcttgcttgcagGTTTTTAATAGTTTTGGAAGGCATTTCTGCTTGCACTTTGAGGCGTTCCAGCTTGGCTCAGCTCCAGTGTATATGGCATTTTTGCGATTCATGGGTGATG
species | Glycine max |
transcript | GLYMA19G33170.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGTCAAAGCAAATCCACATGAAGTTGAAA-TGCCACATGGATGCTAACT GTTTTTA-TAGTTTTGGAAG-CATT-CTGCTTGCACTTTGAGGCGT-CCAGEST: gi|120491797|gb|EH219964.1|EH219964
genomic: ATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTgtaagttatt ... ttgcttgcagGTTTTTAATAGTTTTGGAAGGCATTTCTGCTTGCACTTTGAGGCGTTCCAG
EST: ATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACT GTTTTTAATAGTTTTGGAAGGCATTTCTGCTTGCACTTTGAGGCGTTCCAGEST: gi|192317975|gb|FK009455.1|FK009455
genomic: ATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTgtaagttatt ... ttgcttgcagGTTTTTAATAGTTTTGGAAGGCATTTCTGCTTGCACTTTGAGGCGTTCCAG
EST: ATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACT GTTTTTAATAGTTTTGGEST: gi|120492181|gb|EH220348.1|EH220348
genomic: ATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTgtaagttatt ... ttgcttgcagGTTTTTAATAGTTTTGG
EST: ATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACT GTTTTTAATAGTTTTGGAAGGCATTTCTGCTTGCACTNTGAGGCGTTCCAG
genomic: ATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTgtaagttatt ... ttgcttgcagGTTTTTAATAGTTTTGGAAGGCATTTCTGCTTGCACTTTGAGGCGTTCCAG
cctaaagcctaatataaagatccccacttgacatgttgaagtttcttgcttgcagGTTTTTAATAGTTTTGGAAGGCATTTCTGCTTGCACTTTGAGGCGTTCCAGCTTGGCTCAGCTCCAGTGTATATGGCATTTTTGCGATTCATGGGTGATG
tttcttgctt CT-rich tract
taatataaagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttctgaatacatgttatcacaaatgttcttgtgacctcatgatcctaaagcctaatataaagatccccacttgacatgttgaagtttcttgcttgcagGTTTTTAATAGTTTTGGAAGGCATTTCTGCTTGCACTTTGAGGCGTTCCAGCTTGGCTCAGCTCCAGTGTATATGGCATTTTTGCGATTCATGGGTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC