Sequence
atgc intronic sequence ATGC exonic sequencegtttgttggttaatagaatttgttttcccttttataatctgttgactttgtttcaagcaacatggttgatagtcttccttctttcagGATCTGCTCCACTCACCGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTCTTGGTGCATTAGCCCTGGCTACTGAACCTCCTAACGATGGACT
Basic information
species | Glycine max |
transcript | GLYMA19G31770.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G31770.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G41560.1 (Arabidopsis thaliana), 3'ss of exon 5
gtttgttggttaatagaatttgttttcccttttataatctgttgactttgtttcaagcaacatggttgatagtctt---ccttctttcagGATCTGCTCCACTCACCGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTCTTGGTGCATTAGCCCTGGCTACTGAACCTCCTAACGATGGACT
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----gtacgacagaaaaaccaatcaaacaccatctt-tcttctagcgtttggtcaaatatagtaaccatttcttttggtttcttttccagGATCTGCTCCACTCACTGCTGTGCAACTGCTTTGGGTCAACATGATCATGGACACACTTGGTGCATTGGCTCTAGCAACAGAACCTCCCAATGAAGGTTT
upper sequence: GLYMA19G31770.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G57330.1 (Arabidopsis thaliana), 3'ss of exon 5
gtttgttggttaatagaatttgttttcccttttataatctgttgactttgtttca-agcaacatggttgatagtcttccttcttt-cagGATCTGCTCCACTCACCGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTCTTGGTGCATTAGCCCTGGCTACTGAACCTCCTAACGATGGACT
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-----gtaagtaaaatcaaacacatgcacaattttcaccaatgatttttgaataacagtttcagtaatgattgttttgcaccttttcagGATCTGCGCCACTCACCGCAGTGCAACTGCTTTGGGTGAACATGATCATGGACACACTTGGTGCATTGGCTCTAGCGACCGAACCTCCCAACGAAGGTTT
upper sequence: GLYMA19G31770.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g08960.t01 (Vitis vinifera), 3'ss of exon 5
-------------------------------------------gtttgttggttaatagaatttgttttcccttttataatc-tgttgactttgtttcaagcaacatggttgatagtcttc----cttctttcagGATCTGCTCCACTCACCGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTCTTGGTGCATTAGCCCTGGCTACTGAACCTCCTAACGATGGACT
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gtgcgttggcccatggagctagtcttttcatttcatgtagtgctcttatttgtacttttgcataatatgccaatcaacaacagcagcaataatgataataataataatgataaggatctttgaaacaacattcagGATCTGCCCCCTTTACGGCTGTCCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTCGGTGCATTGGCATTGGCGACAGAACCTCCAAACGATGCACTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298178942|gb|HO024677.1|HO024677EST: AGTTAATGTTGTTGCTCTGGTTATCAACTTCTTTTCTGCGTGCATCACCG GATCTGCTCCACTCACCGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGG
genomic: AGTTAATGTTGTTGCTCTGGTTATCAACTTCTTTTCTGCGTGCATCACTGgtttgttggt ... cttctttcagGATCTGCTCCACTCACCGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tataatctgttgactttgtttcaagcaacatggttgatagtcttccttctttcagGATCTGCTCCACTCACCGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTCTTGGTGCATTAGCCCTGGCTACTGAACCTCCTAACGATGGACT
tagtcttccttctttc CT-rich tract
tttgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgttggttaatagaatttgttttcccttttataatctgttgactttgtttcaagcaacatggttgatagtcttccttctttcagGATCTGCTCCACTCACCGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTCTTGGTGCATTAGCCCTGGCTACTGAACCTCCTAACGATGGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA