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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcgtttgagaatcgatggaaattatgtgctcacttcacttattccatctggaaccaacaggctcaaaaacttaatagtattctctctgatgatatttcagGAATCTTCATCTTTGAGAAACATACCGGTGGTGATTATGTCATCTGAAAATGTGCCTTCAAGGATTAACAG

Basic information

species Glycine max
transcript GLYMA19G31320.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G31320.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g05390.t01 (Vitis vinifera), 3'ss of exon 3
--tcgtttgagaatcgatggaaattatgtgctcactt-cacttattccatctggaaccaacaggctcaaaaacttaatagtattctctctgatgatatttcagGAATCTTCATCTTTGAGAAACATACCGGTGGTGATTATGTCATCTGAAAATGTGCCTTCAAGGATTAACAG
    |  | |  ||  | || | ||   |||  ||   |    ||   |  |   ||        |     | ||  || |  | | | |  |||| || ||||||||||||||||||||||| ||||| || ||||| ||||||||||| ||||||||||||||||| | |||
taaggcctaaagatacaaggga-ttccatgcaaacaaacggaaatgggaaatttgactgg--attttttttattttttatttatttatttactgattttacagGAATCTTCATCTTTGAGAAATATACCAGTAGTGATCATGTCATCTGAGAATGTGCCTTCAAGGATCACCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctggaaccaacaggctcaaaaacttaatagtattctctctgatgatatttcagGAATCTTCATCTTTGAGAAACATACCGGTGGTGATTATGTCATCTGAAAATGTGCCTTCAAGGATTAACAG
                                      ctctgat  putative branch site (score: 4)
                   aaaaacttaatagtat  TA-rich tract