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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtcttctagcttttgtttttttgcagctgttttgttgatgctttgtttttgttctgaggtttttcttattgaagaagtgtttatgtggtgtcatagGTGTATGAAATTTTGGATAATGCTGTTGATGAAGCTCAAGCTGGGTTTGCTTCCAAGATTGATGTTGTTTTACTTGCGGATGATTCTGTGAGCATCACAG

Basic information

species Glycine max
transcript GLYMA19G31030.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G31030.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g16290.1 (Oryza sativa), 3'ss of exon 3
gtattgtcttctagcttttgtttttttgcagctgttttgttgatgctttgtttt-tgttctgaggtttttcttattgaagaagtgtttatgtggtg--tcatagGTGTATGAAATTTTGGATAATGCTGTTGATGAAGCTCAAGCTGGGTTTGCTTCCAAGATTGATGTTGTTTTACTTGCGGATGATTCTGTGAGCATCACAG
     || |  |   |   | ||    ||  ||||||| ||  ||   |      | |||     | ||  ||  |||  |   || |   |||||  ||| |||| |||||||| ||||||||||| || |||||||||||||| || |  ||  | ||| |||||||| |  | | ||  ||  |||| || ||  | ||||
-----gtatattgaatgcagattag--gctactgttttttttctgtggtacaaagtattccatattgttcttttctgatcattcgtctgaatggtgtatcacagGTTTATGAAATATTGGATAATGCCGTGGATGAAGCTCAAGCAGGCTACGCCACTAAGGTTGATGTTATCCTTCATGGCGACAATTCAGTTAGTGTAACAG

upper sequence: GLYMA19G31030.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G111014_T01 (Zea mays), 3'ss of exon 3
gtattgtcttctagcttttgtttttttgcagctgttttgttgatgctttgtttttgttctgaggtttttcttattgaagaagtgtttatgtggtgtcatagGTGTATGAAATTTTGGATAATGCTGTTGATGAAGCTCAAGCTGGGTTTGCTTCCAAGATTGATGTTGTTTTACTTGCGGATGATTCTGTGAGCATCACAG
||||         | | || |  || ||   |||  || || | || ||     || | |  |  || | |  |    |   || ||   |  | |||||||| |||||||| |||||||||||||| |||||||||||||| ||   |||||| ||||||||||| ||| | | ||  ||  ||||||| ||  | ||||
gtatatcaaatgcgatattatgcttctgttcctgcatttttaacgcgtt----ctgctttatgtcttatttggtcattgttttggttggtt--tatcatagGTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCTTCGAAGATTGATGTAGTTCTTCATGATGACAATTCTGTCAGTGTAACAG

upper sequence: GLYMA19G31030.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g05120.t01 (Vitis vinifera), 3'ss of exon 3
--gtattgtcttct--agcttttgtttttttgcagct-gttttgttgatgctttgtttttgttctgaggtttttcttattgaagaagtgtttatgtggtgtcatagGTGTATGAAATTTTGGATAATGCTGTTGATGAAGCTCAAGCTGGGTTTGCTTCCAAGATTGATGTTGTTTTACTTGCGGATGATTCTGTGAGCATCACAG
   |||| | | ||  | | || |||||| || |  | ||| |  |  ||   |  | |    ||||    ||  |  |  |  ||  |  ||||   |    ||||| |||||||| |||||||||||  ||||||| ||||||||||| |||||||| ||| | || |||||||||||||| ||||||||||| |||||||| |
gtatattatttcctttaacattggtttttgtggaatttgttctaattttgaaatcatctcag-ctgaaaacttgttgctgaattaatcgactatgctttcctttagGTTTATGAAATATTGGATAATGCCATTGATGAGGCTCAAGCTGGATTTGCTTCAAAGGTAGACGTTGTTTTACTTGCTGATGATTCTGTAAGCATCACTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20813114|gb|BQ297592.1|BQ297592
EST:     GGCCCGGGATGTATATTGGAAGCACCGGCCCACGAGGGTTGCACCATTTG                         GCGTATGAAATTTTGGATAATGCTGTTGATGAAGCTCAAGCTGGGGTTGCT
genomic: GGCCCGGGATGTATATTGGAAGCACCGGCCCACGAGGGTTGCACCATTTGgtattgtctt ... ggtgtcatagGTGTATGAAATTTTGGATAATGCTGTTGATGAAGCTCAAGCTGGGTTTGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtttttgttctgaggtttttcttattgaagaagtgtttatgtggtgtcatagGTGTATGAAATTTTGGATAATGCTGTTGATGAAGCTCAAGCTGGGTTTGCTTCCAAGATTGATGTTGTTTTACTTGCGGATGATTCTGTGAGCATCACAG
                  tttttcttattgaa  TA-rich tract