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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttaaataaacaatcggctaatcttgatcttaattcttttaatttgttagtattagtactattttgtttttttttttattgctttgagataacatggttttactctatgcttgggctggattagGATGGAGAAGTTGGACATGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGGAACTATTGTAACAGTTGCTGGGGCCATGTTGATGACATTGTATAAAGGG

Basic information

species Glycine max
transcript GLYMA19G30640.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G30640.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0040g00800.t01 (Vitis vinifera), 3'ss of exon 3
gtatatttaaataaacaatcggctaatcttgatcttaattcttttaatttgttagtattagtactattttgtttttttttttattgctttga----gataacatggttttactctatgcttgggctggat-----tagGATGGAGAAGTTGGACATGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGGAACTATTGTAACAGTTGCTGGGGCCATGTTGATGACATTGTATAAAGGG
                                              ||  ||    |||| |       | |   | | | |  || |||||    | || || |||  |     |||   | | || ||     ||||||||||||||| |||||||  ||  | |||||||||||||||||| | |||||  | || || || || |||||||||||||||||||| ||||| || 
--------------------------------------------gtatgggtctacattaatctctcgctctccctctctcttgtgttttgaactagctagcacggtgatgtaacatggg-gtgatgaatatatatagGATGGAGAAGTTAGACATGAAGAAGTTTAGATGCCAAGCAAAGGTGGTGGGAACCGTGGTGACTGTGGCAGGGGCCATGTTGATGACATTATATAAGGGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209709729|gb|BW668237.1|BW668237
EST:     ATTAGCAACATTCTTCCTGCAATGACATTTGTGATGGCTGCTATTTTTAG                         GATGGAGAAGTTGGACATGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGG
genomic: ATTAGCAACATTCTTCCTGCAATGACATTTGTGATGGCTGCTATTTTTAGgtatatttaa ... gctggattagGATGGAGAAGTTGGACATGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttttattgctttgagataacatggttttactctatgcttgggctggattagGATGGAGAAGTTGGACATGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGGAACTATTGTAACAGTTGCTGGGGCCATGTTGATGACATTGTATAAAGGG
                 agataac  putative branch site (score: 3)
     tttatt  TA-rich tract