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...atataatgtcacttttatttttcacaagaagtcgtaaatatattattagtttattgtatgaagtaactttaatctttctaaaaaaaaaattcatgttcagAATATTGAGCAAGGGAAGAGGTATAAGGTGGTCTATCATGTTAAATCAGAAAGAAAGTTTGATTTTCAACTGTCATTCACGGGTGTTGATGTTATAAAAG
species | Glycine max |
transcript | GLYMA19G30460.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACCTTGCCCATATGGTGTTGGTATCTCTAACCCTGGTTATTGGGGCATG AATATTGAGCAAGGGAAGAGGTATAAGGTGGTCTATCATGTTAAATCAGAAEST: gi|213591414|gb|DB955734.1|DB955734
genomic: AACCTTGCCCATATGGTGTTGGTATCTCTAACCCTGGTTATTGGGGCATGgtaaggaaat ... tcatgttcagAATATTGAGCAAGGGAAGAGGTATAAGGTGGTCTATCATGTTAAATCAGAA
EST: AACCTTGCCCATATGGTGTTGGTATCTCTAACCCTGGTTATTGGGGCATG AATATTGAGCAAGGGAAGAGGTATAAGGTGGTCTATCATGTTAAATCAGAAEST: gi|193541941|gb|FK494457.1|FK494457
genomic: AACCTTGCCCATATGGTGTTGGTATCTCTAACCCTGGTTATTGGGGCATGgtaaggaaat ... tcatgttcagAATATTGAGCAAGGGAAGAGGTATAAGGTGGTCTATCATGTTAAATCAGAA
EST: AACCTTGCCCATATGGTGTTGGTATCTCTAACCCTGGTTATTGGGGCATG AATATTGAGCAAGGGAAGAGGTATAAGGTGGTCTATCATGTTAAATCAGAAEST: gi|193572281|gb|FK531342.1|FK531342
genomic: AACCTTGCCCATATGGTGTTGGTATCTCTAACCCTGGTTATTGGGGCATGgtaaggaaat ... tcatgttcagAATATTGAGCAAGGGAAGAGGTATAAGGTGGTCTATCATGTTAAATCAGAA
EST: TATGGTGTTGGTATCTCTAACCCTGGTTATTGGGGCATG AATATTGAGCAAGGGAAGAGGTATAAGGTGGTCTATCATAGTTAAATCAGAEST: gi|208065311|gb|GD862163.1|GD862163
genomic: TATGGTGTTGGTATCTCTAACCCTGGTTATTGGGGCATGgtaaggaaat ... tcatgttcagAATATTGAGCAAGGGAAGAGGTATAAGGTGGTCTATCAT-GTTAAATCAGA
EST: AACCTTGCCCATATGGTGTTGGTATCTCTAACCCTGGTTATTGGGGCATG AATATTGAGCAAGGGAAGAGGTATAAGGTGGTCTATCATGTTAAAATCAAGEST: gi|213617613|gb|DB969325.1|DB969325
genomic: AACCTTGCCCATATGGTGTTGGTATCTCTAACCCTGGTTATTGGGGCATGgtaaggaaat ... tcatgttcagAATATTGAGCAAGGGAAGAGGTATAAGGTGGTCTATCATGTTAAA-TCA-G
EST: AACCTTGCCCATATGGTGTTGGTATCTCTAACCCTGGTTATTGGGGCATG AATATTGAGCAAGGGAAGAGGTATAAGGTGGTCTATCATGT
genomic: AACCTTGCCCATATGGTGTTGGTATCTCTAACCCTGGTTATTGGGGCATGgtaaggaaat ... tcatgttcagAATATTGAGCAAGGGAAGAGGTATAAGGTGGTCTATCATGT
ttagtttattgtatgaagtaactttaatctttctaaaaaaaaaattcatgttcagAATATTGAGCAAGGGAAGAGGTATAAGGTGGTCTATCATGTTAAATCAGAAAGAAAGTTTGATTTTCAACTGTCATTCACGGGTGTTGATGTTATAAAAG
ttctaaa putative branch site (score: 2)
tatgaagtaactttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atataatgtcacttttatttttcacaagaagtcgtaaatatattattagtttattgtatgaagtaactttaatctttctaaaaaaaaaattcatgttcagAATATTGAGCAAGGGAAGAGGTATAAGGTGGTCTATCATGTTAAATCAGAAAGAAAGTTTGATTTTCAACTGTCATTCACGGGTGTTGATGTTATAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - tgtcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa