1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtagtgcatagtaatagtaatattatgtcttagaatcattcctcacagtgataataaaccattatgtattgcatttcatatttatcttacattttaccagGGGATTTAAAGCTCTAAAACAAACTGTGAAGCTTTATTATAGACTTGGAAGGTATAAAGAGATGATGGAAGCCTACCGGGAGATGTTGACTTACATTAAA
species | Glycine max |
transcript | GLYMA19G30100.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTTCTGGTTTTGCTGAGGTAGTACGCATGGAACAGGAGAAGGCAGAATG GGGATTTAAAGCTCTAAAACAAACTGTGAAGCTTTATTATAGACTTGGAAGEST: gi|192319385|gb|FK009927.1|FK009927
genomic: CTTTCTGGTTTTGCTGAGGTAGTACGCATGGAACAGGAGAAGGCAGAATGgtgagtattt ... attttaccagGGGATTTAAAGCTCTAAAACAAACTGTGAAGCTTTATTATAGACTTGGAAG
EST: CTTTCTGGTTTTGCTGAGGTAGTACGCATGGAACAGGAGAAGGCAGAATG GGGATTTAAAGCTCTAAAACAAACTGTGAAGCTTTATTATAGACTTGGAAGEST: gi|4313624|gb|AI460743.1|AI460743
genomic: CTTTCTGGTTTTGCTGAGGTAGTACGCATGGAACAGGAGAAGGCAGAATGgtgagtattt ... attttaccagGGGATTTAAAGCTCTAAAACAAACTGTGAAGCTTTATTATAGACTTGGAAG
EST: CTTTCTGGTTTTGCTGAGGTAGTACGCATGGAACAGGAGAAGGCAGAATG GGGATTTAAAGCTCTAAAACAAACTGTGAAGCTTTATTATAGACTTGGAAG
genomic: CTTTCTGGTTTTGCTGAGGTAGTACGCATGGAACAGGAGAAGGCAGAATGgtgagtattt ... attttaccagGGGATTTAAAGCTCTAAAACAAACTGTGAAGCTTTATTATAGACTTGGAAG
cagtgataataaaccattatgtattgcatttcatatttatcttacattttaccagGGGATTTAAAGCTCTAAAACAAACTGTGAAGCTTTATTATAGACTTGGAAGGTATAAAGAGATGATGGAAGCCTACCGGGAGATGTTGACTTACATTAAA
atcttac putative branch site (score: 3)
ttttacc CT-rich tract
atttcatatttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtgcatagtaatagtaatattatgtcttagaatcattcctcacagtgataataaaccattatgtattgcatttcatatttatcttacattttaccagGGGATTTAAAGCTCTAAAACAAACTGTGAAGCTTTATTATAGACTTGGAAGGTATAAAGAGATGATGGAAGCCTACCGGGAGATGTTGACTTACATTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- agtgcat
- - - - - - - - - - - - - - - - - - - - cctcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - aataaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatttc