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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaaactgtatgttaaatgggggcaggctgagttcattttttaaatggttttacattttgtgatgttatgtttctatgtcatgtcatacagATATGTACTCTTGAAGATCTATGGGATGATGAGAAGAAGAAGGCGCAGTTTCATTGGACATTCATATTCTCAAACCTTATTGTGCAATGGGCTCAGTGGT

Basic information

species Glycine max
transcript GLYMA19G29990.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8826555|gb|BE210285.1|BE210285
EST:     CTTGCTGGCAGACGATGATTATATTGAGAATAAGAAG                         ATATGTACTCTTGAAGATCTATGGGATGATGAGAAGAAGAAGGCGCAGTTT
genomic: CTTGCTGGCAGACGATGATTATATTGAGAATAAGAAGgtgagaaact ... tgtcatacagATATGTACTCTTGAAGATCTATGGGATGATGAGAAGAAGAAGGCGCAGTTT
EST: gi|4313915|gb|AI461034.1|AI461034
EST:     CTTGCTGGCAGACGATGATTATATTGAGAATAAGAAG                         ATATGTACTCTTGAAGATCTATGGGATGATGAGAAGAAGAAGGCGCAGTTT
genomic: CTTGCTGGCAGACGATGATTATATTGAGAATAAGAAGgtgagaaact ... tgtcatacagATATGTACTCTTGAAGATCTATGGGATGATGAGAAGAAGAAGGCGCAGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttaaatggttttacattttgtgatgttatgtttctatgtcatgtcatacagATATGTACTCTTGAAGATCTATGGGATGATGAGAAGAAGAAGGCGCAGTTTCATTGGACATTCATATTCTCAAACCTTATTGTGCAATGGGCTCAGTGGT
            ttttacatttt  TA-rich tract