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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatcatgaatattttctgtgtatagatcaaatgcaatctttgctattccatatatctttaaacttactgtaatgttatgtaatagtttgtacaaaattgaggcattgaatcttggattttccttacattcctgatcctgtatttgtgcagACCATTTTGGTTGAACCAACAACTGGAAATACAGGACTTGGCATTGCTTTTGTTGCAGCAACAAAGGGGTACAAACTTATAGTCACAATGCCTGCTTCTA

Basic information

species Glycine max
transcript GLYMA19G29740.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G29740.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g59920.1 (Oryza sativa), 3'ss of exon 3
gtacatcatgaatattttctgtgtatagatcaaatgcaatctttgctattccatatatctttaaacttactgtaatgttatg-taatagtttgtacaaaattgaggcattgaatcttggattttccttacattcctgatcctgtatttgtgcagACCATTTTGGTTGAACCAACAACTGGAAATACAGGACTTGGCATTGCTTTTGTTGCAGCAACAAAGGGGTACAAACTTATAGTCACAATGCCTGCTTCTA
                                                                       || |  ||||  | ||||| | | ||| | |       ||||  ||  |  ||    | || | |       ||  | ||||||||||||||||||||||||| ||||||||||| ||  | ||| | |||| ||| || ||  | | ||| ||||| || ||||  ||  | ||| | || |
-----------------------------------------------------------------------gttagattatcctgatagtatttgcaatactaccatcatgaagattctaacttgtgcatatacttc------tacctatgcagACCATTTTGGTTGAACCAACTACTGGAAATACTGGTATAGGCCTAGCTTCTGTGGCTGCTGCTAGGGGATACAAGCTAATAGCAACTGTACCTTCATCAA

upper sequence: GLYMA19G29740.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G133359_T01 (Zea mays), 3'ss of exon 3
gtacatcatgaatattttctgtgtatagatcaaatgcaatctttgctattccatatatctttaaacttactgtaatgttatgtaatagtttgtacaaaattgaggcattgaatcttggattttcct-tacattcctgatcctgtatttgtgcagACCATTTTGGTTGAACCAACAACTGGAAATACAGGACTTGGCATTGCTTTTGTTGCAGCAACAAAGGGGTACAAACTTATAGTCACAATGCCTGCTTCTA
                                                                      |  ||    || | ||  | |   ||| |||    ||| |   | |  ||| |  | ||      || |    ||  |||||||||||||||||| |||||||||||||||||||| ||  | | |||||||| ||| || ||| |||  || |||||  | ||||  ||||||||| | ||  
---------------------------------------------------------------------gttaaagaccatctcatgttattagcaatattat--catcg---cctacattgtaatatatgcagatggtttc-tacctgtgcagACCATTTTGGTAGAACCAACAACTGGAAATACTGGTGTAGCCATTGCTTCTGTGGCTGCAGCAAGAGGATACAAGTTGATAGCAACAATGCCTTCATCGT

upper sequence: GLYMA19G29740.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G03630.1 (Arabidopsis thaliana), 3'ss of exon 3
gtacatcatgaatattttctgtgtatagatcaaatgcaatctttgctattccatatatctttaaacttactgtaatgttatgtaatagtttgtacaaaattgaggcattgaatcttggattttccttacattcctgatcctgtatttgtgcagACCATTTTGGTTGAACCAACAACTGGAAATACAGGACTTGGCATTGCTTTTGTTGCAGCAACAAAGGGGTACAAACTTATAGTCACAATGCCTGCTTCTA
                                                         |  ||  ||||  ||   |   || |  ||   ||| |    |||   ||||| |  |||         ||  |   || |  |  |||   ||||||  | || || ||||||||||| ||||| || || ||||| ||||| ||||| || ||| | || || ||||| |||||||| |||||||| |||||||
--------------------------------------------------------gttattgtacttcttgcctttcgatattttaa--tgttctgtgttgccacattgtagattg--------ctaattcgatggtgtt--attaaagcagACTGTATTAGTAGAACCAACAACCGGAAACACTGGCCTTGGGATTGCATTTGTGGCTGCAGCTAAAGGCTACAAGCTTATAGTGACAATGCCAGCTTCTA

upper sequence: GLYMA19G29740.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0056g00820.t01 (Vitis vinifera), 3'ss of exon 3
----------------gtacatcatgaatattttctgtgtatagatcaaatgcaatctttgctattccatatatctttaaacttactgtaatgttatgtaatagtttgtacaaaattgaggcattgaatcttggattttccttacattcctgatcctgtatttgtgcagACCATTTTGGTTGAACCAACAACTGGAAATACAGGACTTGGCATTGCTTTTGTTGCAGCAACAAAGGGGTACAAACTTATAGTCACAATGCCTGCTTCTA
                | || | ||| | ||   |  | | ||||||||   | ||  ||  || |  | |   ||||     |    ||||      ||||   |    |    |  | ||||      || |        || ||  |   | |||| ||| ||||||  || || ||||||||||||| ||| |||||||||||||| ||||| |||||||| || || ||||| ||||||||||||||||| |||||||| || |
gtaagcttcttctcttgaac-ttatggaaatgg-cactctttagatcaatatctattgttattactgaaaaccccttt---tctctattaattgggattaatcactgaagcctggtgaaagcat--gtctttagtaccattgtatatctcgttttctgtctttatgcagAGTATATTAGTTGAACCAACAAGTGGTAATACAGGACTTGGTATTGCATTTGTTGCGGCCACTAAGGGATACAAACTTATAGTCACCATGCCTGCATCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgaggcattgaatcttggattttccttacattcctgatcctgtatttgtgcagACCATTTTGGTTGAACCAACAACTGGAAATACAGGACTTGGCATTGCTTTTGTTGCAGCAACAAAGGGGTACAAACTTATAGTCACAATGCCTGCTTCTA
        attgaat  TA-rich tract