1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatattcagaacccattgacttcatccttacttttttctaacttatgtgcattattttttgtcttctcccttgatgattgggttttctgtctaaaatatgcattcattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGTGACTACCTTTCTGTGAAAGGACCCAAG
species | Glycine max |
transcript | GLYMA19G29720.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCCTACTACATTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGTEST: gi|51336831|gb|CO980697.1|CO980697
genomic: CCCCTACTACATTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... cattcattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: ACATTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGTEST: gi|33389849|gb|CA853056.1|CA853056
genomic: ACATTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... cattcattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: CCCCTACTACATTGGATTCCGATGTTGGACATTTTGAACTANTTATTAAG ATGNACCCACANGGAAGGATGTCACACCATTTCCGNGAGATGCGTGTNGGT
genomic: CCCCTACTACATTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... cattcattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
tttttgtcttctcccttgatgattgggttttctgtctaaaatatgcattcattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGTGACTACCTTTCTGTGAAAGGACCCAAG
gtctaaa putative branch site (score: 3)
tctaaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattcagaacccattgacttcatccttacttttttctaacttatgtgcattattttttgtcttctcccttgatgattgggttttctgtctaaaatatgcattcattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGTGACTACCTTTCTGTGAAAGGACCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG