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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagatgcacatgtttgatgtttctttaattcatcagactttcttctttttgttgactttatttattggaaatagGTCATGCATGGAGCAGATCGAGACATTGTGTGGCTGCAACGGGATTTTGGCATTTATGTTTGCAATATGTTCGATACTGGCCAG

Basic information

species Glycine max
transcript GLYMA19G29260.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G29260.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G54440.2 (Arabidopsis thaliana), 3'ss of exon 3
gtcagatgcaca-tgtttgatgtttcttt-----aattcatcagactttcttctttttgt-tgactttatttattggaaatagGTCATGCATGGAGCAGATCGAGACATTGTGTGGCTGCAACGGGATTTTGGCATTTATGTTTGCAATATGTTCGATACTGGCCAG
||    | || | ||    |||| | ||      ||||| |   |  |  ||  |    | |||    |||||    || ||||| || ||||||||||||||||| ||| | ||||| |||||||| |||||||||||||| |||||| | || || || || |||
gttttctccataatgcgcaatgtgttttctacagaattcctagaatatagttaatacaatatgaaaccatttaacttaactagGTAATCCATGGAGCAGATCGAGATATTATTTGGCTTCAACGGGACTTTGGCATTTATGTCTGCAATCTTTTTGACACAGGACAG

upper sequence: GLYMA19G29260.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G35910.1 (Arabidopsis thaliana), 3'ss of exon 3
-------gtcagatgcacatgtttgatgtttctttaattcatcagactttcttctttttgttgactttatttattggaaatagGTCATGCATGGAGCAGATCGAGACATTGTGTGGCTGCAACGGGATTTTGGCATTTATGTTTGCAATATGTTCGATACTGGCCAG
        |  ||| |     ||  || |        |  |  | |  || |   |  | |  | | | ||||| | || ||||| |||||||||||||||||||| ||| | ||||| |||||||| || ||||| ||||| |||||| | || || || || |||
gtttttcctgggatacttcaattccat-tacaaaaggtctaaaatatattttctgtgctctgaaatctgtttat-gtaattagGTAATGCATGGAGCAGATCGAGATATTATCTGGCTTCAACGGGACTTCGGCATATATGTCTGCAATCTCTTTGACACAGGACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctttaattcatcagactttcttctttttgttgactttatttattggaaatagGTCATGCATGGAGCAGATCGAGACATTGTGTGGCTGCAACGGGATTTTGGCATTTATGTTTGCAATATGTTCGATACTGGCCAG
                              tgttgac  putative branch site (score: 3)
                          tttttgttgactttat  TA-rich tract