1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaaaggattatgggtttaaatatttgggtctcaaaatagaaaaacattaaaaacttttgacatgttgagtgagaaagattgaaaagttgggggtgtacagGTTCTTTGTGGACGATGTGGCAATCAGGGTGTTCAAGAACAGCAAGGACTTGGGAGTGAAATTCCCCTTCGACCAGCCAATGAAGATCTACAACAGTCTA
species | Glycine max |
transcript | GLYMA19G28220.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGATGTGGCAATCAGGGTGTTCAAGAACAGCAAGGACTTEST: gi|10846178|gb|BF069139.1|BF069139
genomic: ACAAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... gggtgtacagGTTCTTTGTGGACGATGTGGCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACAAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAAATTGT GTACTTTGTGGACGATGTGGCAAGTCCGG-TGATCAAGAACAGGAAGGAACEST: gi|22523881|gb|BU082692.1|BU082692
genomic: ACAAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... gggtgtacagGTTCTTTGTGGACGATGTGGCAA-TCAGGGTGTTCAAGAACAGCAAGGA-C
EST: ACAAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGATGTGGCAATCAGGGTGTTCAAGAACAGCAAGGACTTEST: gi|19053501|gb|BM732168.1|BM732168
genomic: ACAAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... gggtgtacagGTTCTTTGTGGACGATGTGGCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACAAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGATGTGGCAATCAGGGTGTTCAAGAACAGCAAGGACTTEST: gi|209724328|gb|BW658152.1|BW658152
genomic: ACAAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... gggtgtacagGTTCTTTGTGGACGATGTGGCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACAAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGATGTGGCAATCAGGGTGTTCAAGAACAGCAAGGACTTEST: gi|151398130|gb|EV268008.1|EV268008
genomic: ACAAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... gggtgtacagGTTCTTTGTGGACGATGTGGCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACAAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTG-ACGATGTGGCAATCAGGGTGTTCAAGAACAGCAAGGACTTEST: gi|5175499|gb|AI759832.1|AI759832
genomic: ACAAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... gggtgtacagGTTCTTTGTGGACGATGTGGCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACAAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGATGTGGCAATCAGGGTGTTCAAGAACAGCAAGGACTT
genomic: ACAAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... gggtgtacagGTTCTTTGTGGACGATGTGGCAATCAGGGTGTTCAAGAACAGCAAGGACTT
attaaaaacttttgacatgttgagtgagaaagattgaaaagttgggggtgtacagGTTCTTTGTGGACGATGTGGCAATCAGGGTGTTCAAGAACAGCAAGGACTTGGGAGTGAAATTCCCCTTCGACCAGCCAATGAAGATCTACAACAGTCTA
ttttgac putative branch site (score: 3)
aaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaggattatgggtttaaatatttgggtctcaaaatagaaaaacattaaaaacttttgacatgttgagtgagaaagattgaaaagttgggggtgtacagGTTCTTTGTGGACGATGTGGCAATCAGGGTGTTCAAGAACAGCAAGGACTTGGGAGTGAAATTCCCCTTCGACCAGCCAATGAAGATCTACAACAGTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - -agaaaaa
- - - - - - - - - - - - - - - - - - - - - - -attaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagtga