Sequence
atgc intronic sequence ATGC exonic sequencegttgtttcattcaataagccaaactagtctctctattgtagGTATTAAGATTGATGACGAGGAACTCGCTCGTTTTGTTGAGCGTGTTGATAAGGATAATAATGGTGTTATAACATTTCAAGAATGGAGGGATTTTCTGCT
Basic information
species | Glycine max |
transcript | GLYMA19G28020.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G28020.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os02g10740.1 (Oryza sativa), 3'ss of exon 1
-----------------------------------------------------------gttgtttcattcaataagccaaactagtctctctattgtagGTATTAAGATTGATGACGAGGAACTCGCTCGTTTTGTTGAGCGTGTTGATAAGGATAATAATGGTGTTATAACATTTCAAGAATGGAGGGATTTTCTGCT
|| | | | ||| | | ||| | ||| ||| || | |||||||||||||| || || | |||||||||| ||| ||||||||||||||||| |||| || ||| ||||||||||||| ||||| |
ggtttttttccctattattaaatcactatgtcctaggaaagcacctgataattgtagtccttttgatgtcttacaagtaatatcagtttgctgtttgcagGCATAGAAATTGATGACGAGGAGCTTGCAAGATTTGTTGAGCATGTGGATAAGGATAATAATGGAATTATTACTTTTGAAGAATGGAGGGACTTTCTTTT
upper sequence: GLYMA19G28020.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0068g00890.t01 (Vitis vinifera), 3'ss of exon 1
----------------------------------------------------------gttgttt-cattcaataagccaaactagtctctctattgtagGTATTAAGATTGATGACGAGGAACTCGCTCGTTTTGTTGAGCGTGTTGATAAGGATAATAATGGTGTTATAACATTTCAAGAATGGAGGGATTTTCTGCT
|| ||| ||| | ||||||| | ||||||||| ||||||| ||||| |||||||| ||||| || ||||| |||||||| ||||| || |||||||||||||| || ||||||||| |||||||||| |||||||| |
ttgcttatatatacctttaaacggaattcttctcagagaatggttccaattttagctggtcattttcatcctataagccgcagcagtctctcttttgtagGGATTAAAATTGATGATGAGGAGCTTGCTCGATTTGTTGAACGTGTGGACAAGGATAATAATGGGGTCATAACATTTGAAGAATGGAGAGATTTTCTTTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttgtttcattcaataagccaaactagtctctctattgtagGTATTAAGATTGATGACGAGGAACTCGCTCGTTTTGTTGAGCGTGTTGATAAGGATAATAATGGTGTTATAACATTTCAAGAATGGAGGGATTTTCTGCT
tctctctatt CT-rich tract
attcaataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgtttcattcaataagccaaactagtctctctattgtagGTATTAAGATTGATGACGAGGAACTCGCTCGTTTTGTTGAGCGTGTTGATAAGGATAATAATGGTGTTATAACATTTCAAGAATGGAGGGATTTTCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG