Sequence
atgc intronic sequence ATGC exonic sequencegtatgtctctttctgccttctgaatcctgagtagtcttgaatttgattcaatttccattaataaccaattgctgattttttgtttacttttcaatgtttggataattgcagTACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTGTGTGAGACAATCCTATTGTGGGAACAG
Basic information
species | Glycine max |
transcript | GLYMA19G27570.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G27570.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G119791_T03 (Zea mays), 3'ss of exon 3
gtatgtctctttctgccttctgaatcctgagtagtcttgaatttgattcaatttc-cattaataaccaattgctgattttttgtttacttttcaatgtttgga--taattgcagTACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTGTGTGAGACAATCCTATTGTGGGAACAG----------------------
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------gtcagtattcctccc--attttta-tggtc----aatggatgctattcctcatccagaatcatgatttaaatattcatctgagatgatattcttgagcttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCTGTGAAACTATCCTATTGTGGGAACAGGTTAGTACATTCTTCTAGACTA
upper sequence: GLYMA19G27570.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G119791_T02 (Zea mays), 3'ss of exon 3
gtatgtctctttctgccttctgaatcctgagtagtcttgaatttgattcaatttc-cattaataaccaattgctgattttttgtttacttttcaatgtttgga--taattgcagTACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTGTGTGAGACAATCCTATTGTGGGAACAG
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------gtcagtattcctccc--attttta-tggtc----aatggatgctattcctcatccagaatcatgatttaaatattcatctgagatgatattcttgagcttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCTGTGAAACTATCCTATTGTGGGAACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151409708|gb|EV279516.1|EV279516EST: ATCATTGCAAGTTAATTCTTAAATACCCTGAAGGTACCAACAGCACTTGG TACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTG
genomic: ATCATTGCAAGTTAATTCTTAAATACCCTGAAGGTACCAACAGCACTTGGgtatgtctct ... ataattgcagTACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attaataaccaattgctgattttttgtttacttttcaatgtttggataattgcagTACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTGTGTGAGACAATCCTATTGTGGGAACAG
attttttgtttacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtctctttctgccttctgaatcctgagtagtcttgaatttgattcaatttccattaataaccaattgctgattttttgtttacttttcaatgtttggataattgcagTACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTGTGTGAGACAATCCTATTGTGGGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG