1 5' 3' | 2 5' 3' | 3 5' 3' |
...tctttgtttgttctaaagtttttggtgtttatcaccaatcattaactgtacaccatcttgagttttagctttgattatagcctttcttgtttcttaccagCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATTAAAGCGGTGCTCTCGGATTCTGCTGGCTTCCATGGTATGATGTGATTGGAATGCTTGATAA
species | Glycine max |
transcript | GLYMA19G27480.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCTGAG CAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATTAAAGCGGTGCTCEST: gi|6726524|gb|AW310878.1|AW310878
genomic: CTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCTGAGgtataattct ... ttcttaccagCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATTAAAGCGGTGCTC
EST: CTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCTGAG CAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATTAAAGCGGTGCTC
genomic: CTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCTGAGgtataattct ... ttcttaccagCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATTAAAGCGGTGCTC
ctgtacaccatcttgagttttagctttgattatagcctttcttgtttcttaccagCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATTAAAGCGGTGCTCTCGGATTCTGCTGGCTTCCATGGTATGATGTGATTGGAATGCTTGATAA
ctttgat putative branch site (score: 5)
cctttcttgtttctta putative PPT
tttgattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttgtttgttctaaagtttttggtgtttatcaccaatcattaactgtacaccatcttgagttttagctttgattatagcctttcttgtttcttaccagCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATTAAAGCGGTGCTCTCGGATTCTGCTGGCTTCCATGGTATGATGTGATTGGAATGCTTGATAA
- - tgtttgt
- - - - - - - - - - tttggtg
- - - - - - - - - - - - - - - - - ccaatca
- - - - - - - - - - - - - - - - - - - - - - - - -acaccat