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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctttgtttgttctaaagtttttggtgtttatcaccaatcattaactgtacaccatcttgagttttagctttgattatagcctttcttgtttcttaccagCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATTAAAGCGGTGCTCTCGGATTCTGCTGGCTTCCATGGTATGATGTGATTGGAATGCTTGATAA

Basic information

species Glycine max
transcript GLYMA19G27480.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10255250|gb|BE823016.1|BE823016
EST:     CTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCTGAG                         CAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATTAAAGCGGTGCTC
genomic: CTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCTGAGgtataattct ... ttcttaccagCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATTAAAGCGGTGCTC
EST: gi|6726524|gb|AW310878.1|AW310878
EST:     CTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCTGAG                         CAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATTAAAGCGGTGCTC
genomic: CTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCTGAGgtataattct ... ttcttaccagCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATTAAAGCGGTGCTC
EST: gi|298178876|gb|HO024611.1|HO024611
EST:     CTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCTGAG                         CAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAAT
genomic: CTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCTGAGgtataattct ... ttcttaccagCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtacaccatcttgagttttagctttgattatagcctttcttgtttcttaccagCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATTAAAGCGGTGCTCTCGGATTCTGCTGGCTTCCATGGTATGATGTGATTGGAATGCTTGATAA
                       ctttgat  putative branch site (score: 5)
                                   cctttcttgtttctta  putative PPT
                        tttgattata  TA-rich tract