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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttcctgtatacttgaacttgacagttacatgaatcaatatcaattgcttttatgttgactgacatatttactttttgttttcatgtattctacttggtttgacctgatatctcagGCTAAG

Basic information

species Glycine max
transcript GLYMA19G27250.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209706550|gb|BW667815.1|BW667815
EST:     TGCCTTTGGATGTTCTTTCTGATAGACCTCCCGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGATGTTCTTTCTGATAGACCTCCCGAGAAGAAGTTTGAATGGgtatatttcc ... gatatctcagGCTAAG
EST: gi|193559196|gb|FK512063.1|FK512063
EST:     CGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: CGAGAAGAAGTTTGAATGGgtatatttcc ... gatatctcagGCTAAG
EST: gi|58015600|gb|CX702342.1|CX702342
EST:     CCTCCCGAGAAGAAG-TTGAATGGG                         GCTAAG
genomic: CCTCCCGAGAAGAAGTTTGAAT-GGgtatatttcc ... gatatctcagGCTAAG
EST: gi|31455985|gb|CD398013.1|CD398013
EST:     GTTCTTTCTGATAGACCTCCCGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: GTTCTTTCTGATAGACCTCCCGAGAAGAAGTTTGAATGGgtatatttcc ... gatatctcagGCTAAG
EST: gi|213604354|gb|DB983470.1|DB983470
EST:     GCCTTTGGATGTTC-TTCTAGATAGACCTCCCGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: GCCTTTGGATGTTCTTTCT-GATAGACCTCCCGAGAAGAAGTTTGAATGGgtatatttcc ... gatatctcagGCTAAG
EST: gi|18039442|gb|BM307736.1|BM307736
EST:     TTTGGATGTTCTTTCTGATAGACCTCCCGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TTTGGATGTTCTTTCTGATAGACCTCCCGAGAAGAAGTTTGAATGGgtatatttcc ... gatatctcagGCTAAG
EST: gi|193364946|gb|FK333203.1|FK333203
EST:     GAAG-TTGAATGG                         GCTAAG
genomic: GAAGTTTGAATGGgtatatttcc ... gatatctcagGCTAAG
EST: gi|193709620|gb|FK646000.1|FK646000
EST:     ACCTCCCGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: ACCTCCCGAGAAGAAGTTTGAATGGgtatatttcc ... gatatctcagGCTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacatatttactttttgttttcatgtattctacttggtttgacctgatatctcagGCTAAG
     atttactttttgtttt  TA-rich tract