Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccatgccattctgccgtagcagccatggctctgccatttagcaacactgatttttggtgagcaacttgtttcttattgtagtagtttttttccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCTCCCGAGAAGAAGTTTGAATGG

Basic information

species Glycine max
transcript GLYMA19G27250.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G27250.3 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G067476_T01 (Zea mays), 3'ss of exon 3
ccatgccattctgccgtagcagccatggctctgccatttagcaacactgatttttggtgagcaactt---gtttcttattgtagtagt-ttttttccctatt--agGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCTCCCGAGAAGAAGTTTGAATGG
     ||    ||        || |  |  |    |||||| |    |   || |  ||  ||||     || | |   |  |  | |  ||| | | | ||  |||||||||| ||||||||||| || ||  ||||| ||||  |||| |||||||| ||||||||||||||||||
----tccgacttgaaaacattgctactgtac-ataatttagtagtgttt-cttgtattgtccaacccacggtgtttcgctaaatcaatgctttgtacatgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG

upper sequence: GLYMA19G27250.3 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G067476_T02 (Zea mays), 3'ss of exon 3
ccatgccattctgccgtagcagccatggctctgccatttagcaacactgatttttggtgagcaactt---gtttcttattgtagtagt-ttttttccctatt--agGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCTCCCGAGAAGAAGTTTGAATGG----
     ||    ||        || |  |  |    |||||| |    |   || |  ||  ||||     || | |   |  |  | |  ||| | | | ||  |||||||||| ||||||||||| || ||  ||||| ||||  |||| |||||||| ||||||||||||||||||    
----tccgacttgaaaacattgctactgtac-ataatttagtagtgttt-cttgtattgtccaacccacggtgtttcgctaaatcaatgctttgtacatgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGGTAA

upper sequence: GLYMA19G27250.3 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G376727_T05 (Zea mays), 3'ss of exon 3
---------------------------------------------------ccatgccattc-tgccgtagcagccatggctctgccatttagcaacactgatttttggtgagcaacttgtttcttattgtagtagtttttttccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCTCCCGAGAAGAAGTTTGAATGG
                                                     |||  || | |   |||  | ||     |||    |||  || | ||  |  ||||         | |   | | | || |  ||| | ||  |   ||||||| || ||||||||||| || ||  ||||| ||||  |||| |||| ||| ||||||||||||||||||
gtcccccccccccccccccccgacctctactatacataattttagtgtttcttatgttatacatcttgtattatcc-----tcttattttttacatcgctattgcttggcccatggtatttagttaaatctaatgttttgtatctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTTCCTGAGAAGAAGTTTGAATGG

upper sequence: GLYMA19G27250.3 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G376727_T03 (Zea mays), 3'ss of exon 3
---------------------------------------------------ccatgccattc-tgccgtagcagccatggctctgccatttagcaacactgatttttggtgagcaacttgtttcttattgtagtagtttttttccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCTCCCGAGAAGAAGTTTGAATGG----
                                                     |||  || | |   |||  | ||     |||    |||  || | ||  |  ||||         | |   | | | || |  ||| | ||  |   ||||||| || ||||||||||| || ||  ||||| ||||  |||| |||| ||| ||||||||||||||||||    
gtcccccccccccccccccccgacctctactatacataattttagtgtttcttatgttatacatcttgtattatcc-----tcttattttttacatcgctattgcttggcccatggtatttagttaaatctaatgttttgtatctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTTCCTGAGAAGAAGTTTGAATGGGTAA

upper sequence: GLYMA19G27250.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0068g01370.t01 (Vitis vinifera), 3'ss of exon 3
ccatgccattctgccgtagcagccatggctctgccatttagcaacactgatttttggtgagcaacttgtttcttattgtagtagtttttttccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCTCCCGAGAAGAAGTTTGAATGG
                     | |||   |     ||         ||  |||   ||||  || || |    | |||    | ||||      | ||||||||||||||||||||| ||||| ||||| ||| | ||| | |  |||||||| |||||||||||||| |||
-----------------gtttgacattttttatttatgatttgtttctcgtttcatgtgaagaatttctaatctcttg----acttttgcctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCTCCAGAGAAGAAGTTTGAGTGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21479709|gb|BQ576392.1|BQ576392
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|214005628|gb|DB984636.1|DB984636
EST:     AACCAGCTGTCATAAAGTTCCCAATTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: AACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|192304252|gb|FG993536.1|FG993536
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATACTCAACTCCCATATTGCCTTTGGATGTTCTTTTTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|10843631|gb|BF066906.1|BF066906
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|42722935|gb|CK768834.1|CK768834
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|213619743|gb|DB967365.1|DB967365
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|12773643|gb|BG238570.1|BG238570
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|19346082|gb|BM890962.1|BM890962
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|21887155|gb|BQ740368.1|BQ740368
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|308099225|gb|HO761403.1|HO761403
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|18848454|gb|BM567677.1|BM567677
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|192308235|gb|FK002747.1|FK002747
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCAAATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|6913960|gb|AW395490.1|AW395490
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|22928890|gb|BU546029.1|BU546029
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|15815757|gb|BI788032.1|BI788032
EST:     TGAACCAGCTGCCATAAAGTTCCGTGTTCCCAACAACG-CTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGA
genomic: TGAACCAGCTGTCATAAAGTTCCGTGTTCCCA-CAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGA
EST: gi|254330168|gb|GR839721.1|GR839721
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|192332881|gb|FK024978.1|FK024978
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTTTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|308097960|gb|HO761131.1|HO761131
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|7590568|gb|AW706317.1|AW706317
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|209727179|gb|BW660158.1|BW660158
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|57574048|gb|CX547023.1|CX547023
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|37997713|gb|CF809302.1|CF809302
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|58016544|gb|CX703286.1|CX703286
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|31469976|gb|CD412004.1|CD412004
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|192320995|gb|FK012391.1|FK012391
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|23064074|gb|BU578847.1|BU578847
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATNGT-CTTTCTGATAGACC
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGAT-GTTCTTTCTGATAGACC
EST: gi|254330169|gb|GR839722.1|GR839722
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|9259491|gb|BE347646.1|BE347646
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|37995509|gb|CF807098.1|CF807098
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|27425237|gb|CA936757.1|CA936757
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|13791278|gb|BG653869.1|BG653869
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|192308236|gb|FK002748.1|FK002748
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCAAATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
EST: gi|7693381|gb|AW761474.1|AW761474
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCTGCTTTGCAGgttaatatct ... tccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgatttttggtgagcaacttgtttcttattgtagtagtttttttccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCTCCCGAGAAGAAGTTTGAATGG
 cactgat  putative branch site (score: 3)
                                       tttttttccctatt  putative PPT
                                    tagttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccatgccattctgccgtagcagccatggctctgccatttagcaacactgatttttggtgagcaacttgtttcttattgtagtagtttttttccctattagGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCTCCCGAGAAGAAGTTTGAATGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT