Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtcacatggtttttctacttatcagtctttcaagaatatcatataatgactatgaaccttatattttaggtttgaaggaactactgatgctgtggcagCTCAGTTTTTCTTGAAAATATACACTCTCAGATGAGGATTGCTGCTTTTGATTTATTTGGTGATCCACAAGTTCTGGGATCTCAACCAAATGTATTTGGA

Basic information

species Glycine max
transcript GLYMA19G26840.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G26840.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0068g01550.t01 (Vitis vinifera), 3'ss of exon 3
gtaaagtcacatggttttt------ctacttatcagtctttcaagaatatcatataatgactatgaaccttatattttaggtttgaaggaactactgatgctgtggcagCTCAGTTTTTCTTGAA-AATATACACTCTCAGATGAGGATTGCTGCTTTTGATTTATTTGGTGATCCACAAGTTCTGGGATCTCAACCAAATGTATTTGGA
||||||| | |    ||||      | |||  |   |  || |  | ||||||  |||||  ||  ||||||      |||||  |||| || || ||||||||||||||||| |||||  |||| ||| ||||| || | |||||||  ||||||| ||||||||||||   |||| ||                              
gtaaagtgagagaactttttatgaccaactcttttatgatttacaagtatcatg-aatgataattgaccttaag---cagGTTCCAAGGTACAACAGATGCTGTGGCAGCTCAATTTTTTCTGAAGAATGTACACCCTGAAATGAGGAAAGCTGCTTCTGATTTATTTGGATCTCCAGAA------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgactatgaaccttatattttaggtttgaaggaactactgatgctgtggcagCTCAGTTTTTCTTGAAAATATACACTCTCAGATGAGGATTGCTGCTTTTGATTTATTTGGTGATCCACAAGTTCTGGGATCTCAACCAAATGTATTTGGA
                                      tactgat  putative branch site (score: 2)
               ttatattttaggttt  TA-rich tract