1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtagcattttgccattcttacacacatttttgttcctagatgctccgtttccatccccattaacataaggtgtagtgttgtgttgcagAATCAAGAATATAGAAGCTTCAAAG
species | Glycine max |
transcript | GLYMA19G25900.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAATAGTATGTGACCTTAGAAGCCAGTCAGCCATTGAACGTCTTCGTAG AATCAAGAATATAGAAGCTTCAAAGEST: gi|13181562|gb|BG352902.1|BG352902
genomic: GCAATAGTATGTGACCTTAGAAGCCAGTCAGCCATTGAACGTCTTCGTAGgtaagtagca ... tgtgttgcagAATCAAGAATATAGAAGCTTCAAAG
EST: GCAATAGTATGTGACCTTAGAAGCCAGTCAGCCATTGAACGTCTTCGTAG AATCAAGAATATAGAAGCTTCAAAGEST: gi|19345870|gb|BM890750.1|BM890750
genomic: GCAATAGTATGTGACCTTAGAAGCCAGTCAGCCATTGAACGTCTTCGTAGgtaagtagca ... tgtgttgcagAATCAAGAATATAGAAGCTTCAAAG
EST: GCAATAGTATGTGACCTTAGAAGCCAGTCAGCCATTGAACGTCTTCGTAG AATCAAGAATATAGAAGCTTCAAAG
genomic: GCAATAGTATGTGACCTTAGAAGCCAGTCAGCCATTGAACGTCTTCGTAGgtaagtagca ... tgtgttgcagAATCAAGAATATAGAAGCTTCAAAG
tcctagatgctccgtttccatccccattaacataaggtgtagtgttgtgttgcagAATCAAGAATATAGAAGCTTCAAAG
cattaac putative branch site (score: 2)
attaacataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagcattttgccattcttacacacatttttgttcctagatgctccgtttccatccccattaacataaggtgtagtgttgtgttgcagAATCAAGAATATAGAAGCTTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC