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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaattcagtttctcttactcttatctaaaaccttctaattttaacattggttcaaaaaactaaagtgctctagagtaactcttttttttgttgatgtagATTTATGCAATGCCAGTGTTTGACATGATTGAAACTGTGATGGTGAAGAAGTTGAACTTCAAACCTAGTAGTACACTTCGTTTCATTGTACGCAACGTGT

Basic information

species Glycine max
transcript GLYMA19G24520.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G24520.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G046743_T01 (Zea mays), 3'ss of exon 3
gtgaaattcagtttctcttactcttatctaaaaccttctaattttaacattggttcaaaaaactaaagtgctctagagtaactcttttttttgttgatgtagATTTATGCAATGCCAGTGTTTGACATGATTGAAACTGTGATGGTGAAGAAGTTGAACTTCAAACCTAGTAGTACACTTCGTTTCATTGTACGCAACGTGT
                          |     || | ||| |||   ||||  ||  |  |  || ||| | ||  |  ||||   | ||||   |||| |||| || || |||||||||||||||||||| || || ||| ||||||||||| ||  ||||   ||  ||   ||||| ||| ||||    || | ||  |
-------------------------gtacgcgacat-ctactttcttcattaatt--actatttacagttc-ctgcaaaaactaaatctttt--cgatgcagATCTACGCCATGCCAGTGTTTGACATGATAGAGACGGTGCTGGTGAAGAAGCTGCGCTTCCCTCCCGGTCTGACACTGCGTCTCATCTCTCGGACCGCCT

upper sequence: GLYMA19G24520.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G180659_T03 (Zea mays), 3'ss of exon 2
gtgaaattcagtttctcttactcttatctaaaaccttctaattttaacattggttcaaaaaactaaagtgctctagagtaactcttttttttgttgatgtagATTTATGCAATGCCAGTGTTTGACATGATTGAAACTGTGATGGTGAAGAAGTTGAACTTCAAACCTAGTAGTACACTTCGTTTCATTGTACGCAACGTGT
       |  |     |  || |||        ||| | |   |         | |          || |   | |||  ||  || | ||| ||| || |||| ||||| ||||| |||||||||||||| || || ||| ||||||||||| ||  ||||   ||  |    || || ||| | || |  || | | | |
------gtacgccggacggacgcttggtccctccctcccatgctcgctgcacatgctgcttttcgtagagactt-gagacacggttgtgttt-ttggtgcagATCTATGCCATGCCGGTGTTTGACATGATAGAGACCGTGCTGGTGAAGAAGCTGCGCTTCCCTCCCGGCCTCACGCTGCGTCTGATCGCTCGGACCCTCT

upper sequence: GLYMA19G24520.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0171g00400.t01 (Vitis vinifera), 3'ss of exon 4
gtgaaattcagtttctcttactcttatctaaaaccttctaattttaacattggttcaaaaaactaaagtgctctagagta-actcttttttttgttgatgtagATTTATGCAATGCCAGTGTTTGACATGATTGAAACTGTGATGGTGAAGAAGTTGAACTTCAAACCTAGTAGTACACTTCGTTTCATTGTACGCAACGTGT
                      ||   | ||| ||  ||||||    || | ||   |||   |    | ||| |    |   | || | |   || ||| |||||||||| |||||||||||||| ||||| ||||||||  |||| |||||  || | |||||||| || | ||| ||||| |||||    || ||| | |
-------------------gtgctgtcccaaacccccctaatt----cagtcgtctcaaatctt----tcctccaactcatggttttgtgtgccttcatgcagATTTATGCTATGCCAGTGTTTGATATGATAGAAACTGTCTTGGTAAAGAAACTGCATTTCAAACCCAGCACTACCCTTCGGTTCATCTCTCGGAACATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattggttcaaaaaactaaagtgctctagagtaactcttttttttgttgatgtagATTTATGCAATGCCAGTGTTTGACATGATTGAAACTGTGATGGTGAAGAAGTTGAACTTCAAACCTAGTAGTACACTTCGTTTCATTGTACGCAACGTGT
                                  ctcttttttttgtt  CT-rich tract
      ttcaaaaaactaaa  TA-rich tract