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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctctgatatttgctcttatctatctggctttacttcgctcgaggttggtaattcttgaaatttctccctctgttcaatgcttatgatgtggccttgcagATTTTGGACCAATATAAAGTGTCTTATGACGCTCGAACAAGAGAAGGTGCTGCAGTTTCTGGGAGTTTACCAAAAAGTGTGATATTAGTTGGTCATTCAA

Basic information

species Glycine max
transcript GLYMA19G24220.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G24220.3 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0047g01150.t01 (Vitis vinifera), 3'ss of exon 3
tctctgatatttgctcttatctatctggctttacttcgctcgaggttggtaattcttgaaatttctccctctgttcaatgcttatgatgtggc----cttgcagATTTTGGACCAATATAAAGTGTCTTATGACGCTCGAACAAGAGAAGGTGCTGCAGTTTCTGGGAGTTTACCAAAAAGTGTGATATTAGTTGGTCATTCAA
    | | ||||  | || | || ||   | |  | |     |  ||     |     |  | | |   |   | ||||   ||| || ||||    |||||||||||||||||||||||||| ||||||||| |||||    ||||||||||||||    ||||||  ||| || || ||||| ||||| |||||||| || |
---ttaaaatttttttttttttaactt-ttattttacatcttaatttttctttaaccaatgtcttttgattcatgcaattactattatatggctttgcttgcagATTTTGGACCAATATAAAGAGTCTTATGATGCTCGTGTGAGAGAAGGTGCTGCCAACTCTGGGCCTTTGCCGAAGAGTGTCATATTGGTTGGTCACTCTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtaattcttgaaatttctccctctgttcaatgcttatgatgtggccttgcagATTTTGGACCAATATAAAGTGTCTTATGACGCTCGAACAAGAGAAGGTGCTGCAGTTTCTGGGAGTTTACCAAAAAGTGTGATATTAGTTGGTCATTCAA
     aattcttgaaattt  TA-rich tract