1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gagaattgtcaagcggcttagattctgctagttgaatgagaataacacaccgaaatacaaaattgttaatttagtcttcaatgtttgcattttcctgcagTTACTCTACAATTGCTTGGGTAGCTTCTGTACATAAGGGTGTTCAAGAAAATGTACAATATGGTTACAAAGCTAAGAGTACTTCAGGGACAGTGTTTAAC
species | Glycine max |
transcript | GLYMA19G22590.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCAACTCCATTACTGGTGTATCCTTGGCAGCAGCAGTCATGTCCTTAAG TTACTCTACAATTGCTTGGGTAGCTTCTGTACATAAGGGTGTTCAAGAAAAEST: gi|15815049|gb|BI787324.1|BI787324
genomic: TTCAACTCCATTACTGGTGTATCCTTGGCAGCAGCAGTCATGTCCTTAAGgtacaagcct ... tttcctgcagTTACTCTACAATTGCTTGGGTAGCTTCTGTACATAAGGGTGTTCAAGAAAA
EST: TTCAACTCCATTACTGGTGTATCCTTGGCAGCAGCAGTCATGTCCTTAAG TTACTCTACAATTGCTTGGGTAGCTTCTGTACATAAGGGTGTTCAAGAAAAEST: gi|254338180|gb|GR845536.1|GR845536
genomic: TTCAACTCCATTACTGGTGTATCCTTGGCAGCAGCAGTCATGTCCTTAAGgtacaagcct ... tttcctgcagTTACTCTACAATTGCTTGGGTAGCTTCTGTACATAAGGGTGTTCAAGAAAA
EST: TCAACTCCATTACTGGTGTATCCTTGGCAGCAGCAGTCATGTCCTTAAAG TTACTCTACAATTGCTTGGGGTAGCTTTCTGTACATAAGGGTGGTTCAAAEST: gi|254344615|gb|GR855486.1|GR855486
genomic: TCAACTCCATTACTGGTGTATCCTTGGCAGCAGCAGTCATGTCCTTAA-Ggtacaagcct ... tttcctgcagTTACTCTACAATTGCTTGGG-TAGCTT-CTGTACATAAGGGTG-TTCAA-
EST: TTCAACTCCATTACTGGTGTATCCTTGGCAGCAGCAGTCATGTCCTTAAG TTACTCTACAATTGCTTGGGTAGCTTCTGTACATAAGGGTGTTCAAGAAAA
genomic: TTCAACTCCATTACTGGTGTATCCTTGGCAGCAGCAGTCATGTCCTTAAGgtacaagcct ... tttcctgcagTTACTCTACAATTGCTTGGGTAGCTTCTGTACATAAGGGTGTTCAAGAAAA
cacaccgaaatacaaaattgttaatttagtcttcaatgtttgcattttcctgcagTTACTCTACAATTGCTTGGGTAGCTTCTGTACATAAGGGTGTTCAAGAAAATGTACAATATGGTTACAAAGCTAAGAGTACTTCAGGGACAGTGTTTAAC
tgttaat putative branch site (score: 3)
cattttcct putative PPT
aaatacaaaattgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagaattgtcaagcggcttagattctgctagttgaatgagaataacacaccgaaatacaaaattgttaatttagtcttcaatgtttgcattttcctgcagTTACTCTACAATTGCTTGGGTAGCTTCTGTACATAAGGGTGTTCAAGAAAATGTACAATATGGTTACAAAGCTAAGAGTACTTCAGGGACAGTGTTTAAC
- - - - - - gcggctt
- - - - - - - - - - - ttctgct
- - - - - - - - - - - - - - - - -gaatgag
- - - - - - - - - - - - - - - - - - - - - - acacacc
- - - - - - - - - - - - - - - - - - - - - - - - - -gaaatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgc