1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgcacacttttgattggcatttagagtgtaatcaattactgagcaatttgcttatttgtcttgagaccattttgctaatacaagtgttccttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATAAGCCAACTTACACACCTAATCGTGATGATGGAGACATGTGCATTGTTC
species | Glycine max |
transcript | GLYMA19G22420.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGATGCAAAGGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATEST: gi|192333795|gb|FK025840.1|FK025840
genomic: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGATGCAAAGGGCCAGgtgagtctgc ... ttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGAT
EST: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGATGCAAAGGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATEST: gi|21993989|gb|BQ785517.1|BQ785517
genomic: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGATGCAAAGGGCCAGgtgagtctgc ... ttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGAT
EST: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGATGCAAAGGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATEST: gi|192323120|gb|FK015246.1|FK015246
genomic: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGATGCAAAGGGCCAGgtgagtctgc ... ttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGAT
EST: GATGCAAAGGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATEST: gi|192316668|gb|FK008261.1|FK008261
genomic: GATGCAAAGGGCCAGgtgagtctgc ... ttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGAT
EST: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGATGCAAAGGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATEST: gi|151411877|gb|EV281688.1|EV281688
genomic: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGATGCAAAGGGCCAGgtgagtctgc ... ttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGAT
EST: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGATGCAAAGGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATEST: gi|192316667|gb|FK008260.1|FK008260
genomic: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGATGCAAAGGGCCAGgtgagtctgc ... ttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGAT
EST: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGATGCAAAGGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATEST: gi|192309334|gb|FK000542.1|FK000542
genomic: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGATGCAAAGGGCCAGgtgagtctgc ... ttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGAT
EST: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGATGCAAAGGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGAT
genomic: GCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGATGCAAAGGGCCAGgtgagtctgc ... ttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGAT
atttgcttatttgtcttgagaccattttgctaatacaagtgttccttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATAAGCCAACTTACACACCTAATCGTGATGATGGAGACATGTGCATTGTTC
tgctaat putative branch site (score: 2)
tgttcctttt putative PPT
ttttatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcacacttttgattggcatttagagtgtaatcaattactgagcaatttgcttatttgtcttgagaccattttgctaatacaagtgttccttttatatagGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATAAGCCAACTTACACACCTAATCGTGATGATGGAGACATGTGCATTGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA