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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcctaatgttttaatttctaatcacttgttgacatttctaatcaaatactgatggcttacaggcacatgaattccttattctaatcagctgctgctttgtgttgatgtgcagAATATCGACAAGATTCCACTCGTTAATTGTCCTGTTCTCATAATTCAT

Basic information

species Glycine max
transcript GLYMA19G07360.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G07360.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0219g00290.t01 (Vitis vinifera), 3'ss of exon 3
gttagcctaatgttttaatttctaatcacttgttgacatttctaatcaaatac-tgatggcttacaggcacatgaattccttattct---aatcagctgctgctttgtgttgat---gtgcagAATATCGACAAGATTCCACTCGTTAATTGTCCTGTTCTCATAATTCAT
    |  |  | ||  || |    | || |  || | || | ||   | |||  |  |   | | |   |  || |||  || ||     |||    ||||| ||| |||||||   |||||||| || ||||| |||||||| |||||||||||||| ||||| ||||||
----gtatcttcttcaaaatatctagcattactttatatatatatatatatatatattaattgaaaaataattgcatttattttttatggaattgagtgctggtttctgttgattgtgtgcagAACATTGACAAAATTCCACTGGTTAATTGTCCTGTGCTCATCATTCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaggcacatgaattccttattctaatcagctgctgctttgtgttgatgtgcagAATATCGACAAGATTCCACTCGTTAATTGTCCTGTTCTCATAATTCAT
                  ttattctaat  TA-rich tract