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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacacccttttgattaatcaaaaggattaacagttaatgtcctctaatctctaatatgatacgtatatatatatatatatgttgcagAGGCTATATGATTTGGGAGCACGCAGAGTTCTTGTGACAGGCACAGGACCCTTGGGTTGTGTTCCATCAGAATTGGCCCAACGTGGTAGAAATGGACAAT

Basic information

species Glycine max
transcript GLYMA19G07000.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6914873|gb|AW396403.1|AW396403
EST:     TACCTGCATATGTCAAGTATCTCATCTCTGAGTACCAAAAGCTTTTGCAG                         AGGCTATATGATTTGAGAGCACGCAGAGTTCTTGTGACAGGCACAGGACCC
genomic: TACCTGCATATGTCAAGTATCTCATCTCTGAGTACCAAAAGCTTTTGCAGgtaacaccct ... tatgttgcagAGGCTATATGATTTGGGAGCACGCAGAGTTCTTGTGACAGGCACAGGACCC
EST: gi|192296327|gb|FG989075.1|FG989075
EST:     TACCTGCATATGTCAAGTATCTCATCTCTGAGTACCAAAAGCTTTTGCAG                         AGGCTATATGATTTGGGAGCACGCAGAGTTCTTGTGACAG-CACAG-ACCC
genomic: TACCTGCATATGTCAAGTATCTCATCTCTGAGTACCAAAAGCTTTTGCAGgtaacaccct ... tatgttgcagAGGCTATATGATTTGGGAGCACGCAGAGTTCTTGTGACAGGCACAGGACCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaatgtcctctaatctctaatatgatacgtatatatatatatatatgttgcagAGGCTATATGATTTGGGAGCACGCAGAGTTCTTGTGACAGGCACAGGACCCTTGGGTTGTGTTCCATCAGAATTGGCCCAACGTGGTAGAAATGGACAAT
                ctctaat  putative branch site (score: 3)
            taatctctaatatgat  TA-rich tract