Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagagtttttaacagattctattccaatctgtttcattcgatatatggatatttacatggtttgtttttcttctatgcagAATATTGATAAAGTTGGTGCAGTCAAATGTCCTGTTTTGGTTATACAT

Basic information

species Glycine max
transcript GLYMA19G06960.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26059122|gb|CA802036.1|CA802036
EST:     TTAGAGTACTATACCCCGTAAAACGGACATACTGGTTTGATATTTACAAG                         AATATTGATAAAGTTGGTGCAGTCAAATGTCCTGTTTTGGTTATACAT
genomic: TTAGAGTACTATACCCCGTAAAACGGACATACTGGTTTGATATTTACAAGgtagagtttt ... ttctatgcagAATATTGATAAAGTTGGTGCAGTCAAATGTCCTGTTTTGGTTATACAT
EST: gi|7146943|gb|AW508865.1|AW508865
EST:     TTAGAGTACTATACCCCGTAAAACGGACATACTGGTTTGATATTTACAAG                         AATATTGATAAAGTTGGTGCAGTCAAATGTCCTGTTTTGGTTATACAT
genomic: TTAGAGTACTATACCCCGTAAAACGGACATACTGGTTTGATATTTACAAGgtagagtttt ... ttctatgcagAATATTGATAAAGTTGGTGCAGTCAAATGTCCTGTTTTGGTTATACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatctgtttcattcgatatatggatatttacatggtttgtttttcttctatgcagAATATTGATAAAGTTGGTGCAGTCAAATGTCCTGTTTTGGTTATACAT
                                   tttgtttttcttctat  CT-rich tract
 atatatggatattta  TA-rich tract