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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacacccttttgattaatcaaaaggattaacagttaatgtcctctaatctctaatatgatacgtatatatatatatatatgttgcagAGGCTATATGATTTGGGAGCACGCAGAGTTCTTGTGACAGGCACAGGACCCTTGGCTTGTGTTCCATCAGAATTGGCCCAACGTGGTAGAAATGGACAAT

Basic information

species Glycine max
transcript GLYMA19G06890.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393492|gb|EV263367.1|EV263367
EST:     TACCTGCATATGTCAAGTATCTCATCTCTGAGTACCAAAAGCTTTTGCAG                         AGGCTATATGATTTGGGAGCACGCAGAGTTCTTGTG
genomic: TACCTGCATATGTCAAGTATCTCATCTCTGAGTACCAAAAGCTTTTGCAGgtaacaccct ... tatgttgcagAGGCTATATGATTTGGGAGCACGCAGAGTTCTTGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaatgtcctctaatctctaatatgatacgtatatatatatatatatgttgcagAGGCTATATGATTTGGGAGCACGCAGAGTTCTTGTGACAGGCACAGGACCCTTGGCTTGTGTTCCATCAGAATTGGCCCAACGTGGTAGAAATGGACAAT
                ctctaat  putative branch site (score: 3)
            taatctctaatatgat  TA-rich tract