1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtattcattcattcattcattatcttcaattcataattgttatacttattatacctttgctgttatgtttgatggtatacttattatgtgagtattgatgattttgatgattcacttgtgttatttgttgttgtgttagGCGGCTATTGGGGGGTGGCACTGTTTGGCCGTTGATGATCAGGGCAGAGCTTATGCTTGGG
species | Glycine max |
transcript | GLYMA19G06180.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAACACTCCCAGCCAGGTCAAGGCTCTTTCCAGTGTTAAAATTGTTCAG GCGGCTATTGGGGGGTGGCACTGTTTGGCCGTTGATGATCAGGGCAGAGCTEST: gi|298178579|gb|HO024314.1|HO024314
genomic: AGAACACTCCCAGCCAGGTCAAGGCTCTTTCCAGTGTTAAAATTGTTCAGgtattcattc ... gttgtgttagGCGGCTATTGGGGGGTGGCACTGTTTGGCCGTTGATGATCAGGGCAGAGCT
EST: AGAACACTCCCAGCCAGGTCAAGGCTCTTTCCAGTGTTAAAATTGTTCAG GCGGCTATTGGGGGGTGGCACTGTTTGGCCGTTGATGATCAGGGCAGAGCTEST: gi|298197760|gb|HO039299.1|HO039299
genomic: AGAACACTCCCAGCCAGGTCAAGGCTCTTTCCAGTGTTAAAATTGTTCAGgtattcattc ... gttgtgttagGCGGCTATTGGGGGGTGGCACTGTTTGGCCGTTGATGATCAGGGCAGAGCT
EST: AGAACACTCCCAGCCAGGTCAAGGCTCTTTCCAGTGTTAAAATTGTTCAG GCGGCTATTGGGGGGTGGCACTGTTTGGCCGTTGATGATCAGGGCAGAGCTEST: gi|6454874|gb|AW185623.1|AW185623
genomic: AGAACACTCCCAGCCAGGTCAAGGCTCTTTCCAGTGTTAAAATTGTTCAGgtattcattc ... gttgtgttagGCGGCTATTGGGGGGTGGCACTGTTTGGCCGTTGATGATCAGGGCAGAGCT
EST: AGAACACTCCCAGCCAGGTCAAGGCTCTTTCCAGTGTTAAAATTGTTCAG GCGGCTATTGNGGGGTGGCACTGTTTGGCCGTTGATGATCAGGGCAGAGCTEST: gi|9985795|gb|BE659903.1|BE659903
genomic: AGAACACTCCCAGCCAGGTCAAGGCTCTTTCCAGTGTTAAAATTGTTCAGgtattcattc ... gttgtgttagGCGGCTATTGGGGGGTGGCACTGTTTGGCCGTTGATGATCAGGGCAGAGCT
EST: AGAACACTCCCAGCCAGGTCAAGGCTCTTTCCAGTGTTAAAATTGTTCAG GCGGCTATTGGGGGGTGGCACTGTTTGGCCGTTGATGATCAGGGCAGAGCTEST: gi|298176624|gb|HO026745.1|HO026745
genomic: AGAACACTCCCAGCCAGGTCAAGGCTCTTTCCAGTGTTAAAATTGTTCAGgtattcattc ... gttgtgttagGCGGCTATTGGGGGGTGGCACTGTTTGGCCGTTGATGATCAGGGCAGAGCT
EST: AGAACACTCCCAGCCAGGTCAAGGCTCTTCCCAGTGTTAAAATTGTTCAG GCGGCTATTGGGGGGTGGCACTGTTTGGCCGTTGATGATCAGGGCAGAGCT
genomic: AGAACACTCCCAGCCAGGTCAAGGCTCTTTCCAGTGTTAAAATTGTTCAGgtattcattc ... gttgtgttagGCGGCTATTGGGGGGTGGCACTGTTTGGCCGTTGATGATCAGGGCAGAGCT
tatgtgagtattgatgattttgatgattcacttgtgttatttgttgttgtgttagGCGGCTATTGGGGGGTGGCACTGTTTGGCCGTTGATGATCAGGGCAGAGCTTATGCTTGGG
ttatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcattcattcattcattatcttcaattcataattgttatacttattatacctttgctgttatgtttgatggtatacttattatgtgagtattgatgattttgatgattcacttgtgttatttgttgttgtgttagGCGGCTATTGGGGGGTGGCACTGTTTGGCCGTTGATGATCAGGGCAGAGCTTATGCTTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT