1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgatggattactctagggtttaatataattttttaacattgcttttttttttttttgtggtgtgtctgcacactatgcttgtgttgtctttgtactcagGTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACGGACAATGAGATCAAGAACTACTGGAACACGCATATTAAGAAAAGGTTAACTAAAATGGGAATT
species | Glycine max |
transcript | GLYMA19G02890.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGCAAGAAGAACAAACCATCATTCAACTTCATGCCCTCTTAGGAAACAG GTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACGGACAATGAGATCAAEST: gi|192301728|gb|FG997642.1|FG997642
genomic: TTGCAAGAAGAACAAACCATCATTCAACTTCATGCCCTCTTAGGAAACAGgtttggtatt ... ttgtactcagGTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACGGACAATGAGATCAA
EST: TTGCAAGAAGAACAAACCATCATTCAACTTCATGCCCTCTTAGGAAACAG GTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACGGACAATGAGATCAAEST: gi|213605902|gb|DB968640.1|DB968640
genomic: TTGCAAGAAGAACAAACCATCATTCAACTTCATGCCCTCTTAGGAAACAGgtttggtatt ... ttgtactcagGTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACGGACAATGAGATCAA
EST: TTGCAAGAAGAACAAACCATCATTCAACTTCATGCCCTCTTAGGAAACAG GTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACGGACAATGAGATCAA
genomic: TTGCAAGAAGAACAAACCATCATTCAACTTCATGCCCTCTTAGGAAACAGgtttggtatt ... ttgtactcagGTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACGGACAATGAGATCAA
ttttttttttttgtggtgtgtctgcacactatgcttgtgttgtctttgtactcagGTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACGGACAATGAGATCAAGAACTACTGGAACACGCATATTAAGAAAAGGTTAACTAAAATGGGAATT
ttgtcttt CT-rich tract
tttttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgatggattactctagggtttaatataattttttaacattgcttttttttttttttgtggtgtgtctgcacactatgcttgtgttgtctttgtactcagGTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACGGACAATGAGATCAAGAACTACTGGAACACGCATATTAAGAAAAGGTTAACTAAAATGGGAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
ttgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtc